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The map label for this gene is cirA [C]

Identifier: 87199565

GI number: 87199565

Start: 1602156

End: 1604336

Strand: Direct

Name: cirA [C]

Synonym: Saro_1548

Alternate gene names: 87199565

Gene position: 1602156-1604336 (Clockwise)

Preceding gene: 87199563

Following gene: 87199566

Centisome position: 44.98

GC content: 60.98

Gene sequence:

>2181_bases
ATGTTCAGGACGTCCATTAAACGGTTCGCTTTGGCGGGCTTGATGCTAGCAGGGAGCTCGCTCCCGGTTTTGGCCCATGC
GGCCGAAGATCAGGGCAACGCTCCGGTCGAGGCAGAGGCCGACGCTGACGCGGCTCGCTCGGGGATTGTCGTCACCGGCC
AGCGCGAGAAGGTCACGCCGCAGGCTGAACAGGCGGCTGTCTATGGCAACTATGTCCAGGTCGTCGGTGCGGAGCAGATC
GCCGCAAGCGGTGCATCGAACTTCGCCGAACTCGCCCAGTTCCTGATCAAGGGCGCCAACGTCGGCTATTCGCCGGATGA
AGGCGAATACACGATCCGCCTCGACGGCGGCGGTGACCGCGACACGCTTGTCGTCCTTGATGGCGTGCCGCTCTACGACC
GTGGCCCGGCGCTCGAGGAAATCTGGGGCACGACGACGATCGACCCGCACATGATAGAGGCCGTCGAAGTGTTCCGGGGT
GGCAACAGCCTGTTCTTCGGTTCGAACGGCGGCATTGGTGTGGTCAGCATCCGCACCAAGCGTCCCGACGGCACCAATCG
CGTCGAACTGGGCGCAAGCTATGGCTCGTTCAACTCGCGCGAACTCTGGGGCAATGCGCGCATGGCTCTCGACGGCGAGG
GCGGCGCGCACAGCGTGATGGTCTATGGAAGCAGCCAGAACACCGACGGCCCACGCATCTTCAACCCTGCCGATTTCGTC
GACAACGTGCGCCTCGCCGGTGGCGTGCAGAAGTACCCTCTCAACCGCAACAATGTTGGCCTGAAGTATCGTTTCAAGCC
CAGCGACGCCACCGAGGTCAACCTCAACGCCCAGTACACGCAGATCGAATTCTTCGACGCGTTTCCGGACAACGAGACAT
ATTCGCCCAACCGCGTGCGCTATCCGATCATCGATGCCAGCATCATTCACAAGTGGTCCGATGCCCTGGCATCACAGCTT
GACGCCTACTGGAGCAATCCGAAGCTGAACAACACCGAAACCTTTGCCGAGATTTGCCGGGTGAAGGCAGGCTGCGTGGA
TACCCAGACCGGCAAGGATATTCCGTTCGGGACCGCGACGGGCCGCTCCATCGCCTATCAGTACAAGGGCTATGGCGCCG
AATCCAAGGTGTCGGGCTTCATGGAATGGGGCTTCAATTTCCGCAATACGTTGACCCTTCAGGGCGTCGGCGAAGCCGTC
GCCGGCGTTCAGATGGTATCGTATCGCAACGATTCAGACCCCGTCTTCAAGATCAGCAACGAATGGAACCGGACGACGGG
CCTGTACCTCGACCTGCGTCCGCATCTGCCGTTCAGCCCAACCACCAACATCAGCCTGGCGGGTCGCTTGGACTTCTCCA
ACGCGTTCGACAGCAAGTTCATCTGGAAGTTCGGCGTGCGCCAGCCAATGGGCGACTTCTATGTTCGCGCCAACGGCGGC
ACGTCCTACAGCCTGCCCAAGACGAACGAACTCTTTGCCGACAGTGCCACCACGGTCGGCAACCCGAACCTCAAGCCGGA
ATCGACCGAGACCTACAACGGCGCGATCGGCTTCCAGAAGACGTCGGGTTCGCTCAACGTCAGCGCCGAGATCGGTGTTT
TCCGCACCGACATCACCAATCGCATCCAGGGAACGTCGGGTCTTACCCCGAACACCTATTTCAACAACACTGCACTGACG
CAGATCCGCGGCATCACGGCAGACTTCAACCTGGCGATCGGCGAACAGTGGTCGATCAATGCCGGCTTCACTCGGCAGAA
GGCGCATCTCAAGGGTTCGACGCTGCAGATCAACGAAACGCCGGAATACATGATCCAGGGAACGCTGGCGTGGAATTCGC
CCGACCAGCGCTGGCACGTGAACCTGTTCCCGCGCTACCAGGGGCCGGAATACGCGACGGGCGGTCTGAACAACAGCCTG
CGCCACAATTTCGGCAATTATCTCGTCGTCAACGGCTCGCTTGGCTGGTGGGCGGGGGAGGACCGCCAGCACCGCTTCCA
GGTGCGCGTGGTCAACATCTTCAACGAGAAGTACGCCGAACGCTACGGTTACGGAAACCAGCGCTTCAGCTCCGCGTTCG
TTCGCGGCGAAATCACCACGACGAGCCCGAACTACTTCTACGGATACCCTTTCGAGGGCAAGCCGCGCGCGGTGTACGTG
AGTTACACGACCGCGTTCTGA

Upstream 100 bases:

>100_bases
TCACGCAGCGCGCTTAGCTCCCCGTTCGCACATGCAGCATGCCGTCTGATTCCGACAGCTCGGCGCTGTGCGCAACGCAG
AATAGCAACGGGGAACACAC

Downstream 100 bases:

>100_bases
CCGGGAGGGCGCCGACCTGCAAAAAGGGTCGGCGCCCGACTACAGCCGGGTCACCTGACTGTCACAGGAGAGGCGTAGCT
GCGGCCGTGGCGGTGACATG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor For Transport Vitamin B; Receptor; Outer Membrane Receptor Family Protein; Nb-Dependent Receptor Plug

Number of amino acids: Translated: 726; Mature: 726

Protein sequence:

>726_residues
MFRTSIKRFALAGLMLAGSSLPVLAHAAEDQGNAPVEAEADADAARSGIVVTGQREKVTPQAEQAAVYGNYVQVVGAEQI
AASGASNFAELAQFLIKGANVGYSPDEGEYTIRLDGGGDRDTLVVLDGVPLYDRGPALEEIWGTTTIDPHMIEAVEVFRG
GNSLFFGSNGGIGVVSIRTKRPDGTNRVELGASYGSFNSRELWGNARMALDGEGGAHSVMVYGSSQNTDGPRIFNPADFV
DNVRLAGGVQKYPLNRNNVGLKYRFKPSDATEVNLNAQYTQIEFFDAFPDNETYSPNRVRYPIIDASIIHKWSDALASQL
DAYWSNPKLNNTETFAEICRVKAGCVDTQTGKDIPFGTATGRSIAYQYKGYGAESKVSGFMEWGFNFRNTLTLQGVGEAV
AGVQMVSYRNDSDPVFKISNEWNRTTGLYLDLRPHLPFSPTTNISLAGRLDFSNAFDSKFIWKFGVRQPMGDFYVRANGG
TSYSLPKTNELFADSATTVGNPNLKPESTETYNGAIGFQKTSGSLNVSAEIGVFRTDITNRIQGTSGLTPNTYFNNTALT
QIRGITADFNLAIGEQWSINAGFTRQKAHLKGSTLQINETPEYMIQGTLAWNSPDQRWHVNLFPRYQGPEYATGGLNNSL
RHNFGNYLVVNGSLGWWAGEDRQHRFQVRVVNIFNEKYAERYGYGNQRFSSAFVRGEITTTSPNYFYGYPFEGKPRAVYV
SYTTAF

Sequences:

>Translated_726_residues
MFRTSIKRFALAGLMLAGSSLPVLAHAAEDQGNAPVEAEADADAARSGIVVTGQREKVTPQAEQAAVYGNYVQVVGAEQI
AASGASNFAELAQFLIKGANVGYSPDEGEYTIRLDGGGDRDTLVVLDGVPLYDRGPALEEIWGTTTIDPHMIEAVEVFRG
GNSLFFGSNGGIGVVSIRTKRPDGTNRVELGASYGSFNSRELWGNARMALDGEGGAHSVMVYGSSQNTDGPRIFNPADFV
DNVRLAGGVQKYPLNRNNVGLKYRFKPSDATEVNLNAQYTQIEFFDAFPDNETYSPNRVRYPIIDASIIHKWSDALASQL
DAYWSNPKLNNTETFAEICRVKAGCVDTQTGKDIPFGTATGRSIAYQYKGYGAESKVSGFMEWGFNFRNTLTLQGVGEAV
AGVQMVSYRNDSDPVFKISNEWNRTTGLYLDLRPHLPFSPTTNISLAGRLDFSNAFDSKFIWKFGVRQPMGDFYVRANGG
TSYSLPKTNELFADSATTVGNPNLKPESTETYNGAIGFQKTSGSLNVSAEIGVFRTDITNRIQGTSGLTPNTYFNNTALT
QIRGITADFNLAIGEQWSINAGFTRQKAHLKGSTLQINETPEYMIQGTLAWNSPDQRWHVNLFPRYQGPEYATGGLNNSL
RHNFGNYLVVNGSLGWWAGEDRQHRFQVRVVNIFNEKYAERYGYGNQRFSSAFVRGEITTTSPNYFYGYPFEGKPRAVYV
SYTTAF
>Mature_726_residues
MFRTSIKRFALAGLMLAGSSLPVLAHAAEDQGNAPVEAEADADAARSGIVVTGQREKVTPQAEQAAVYGNYVQVVGAEQI
AASGASNFAELAQFLIKGANVGYSPDEGEYTIRLDGGGDRDTLVVLDGVPLYDRGPALEEIWGTTTIDPHMIEAVEVFRG
GNSLFFGSNGGIGVVSIRTKRPDGTNRVELGASYGSFNSRELWGNARMALDGEGGAHSVMVYGSSQNTDGPRIFNPADFV
DNVRLAGGVQKYPLNRNNVGLKYRFKPSDATEVNLNAQYTQIEFFDAFPDNETYSPNRVRYPIIDASIIHKWSDALASQL
DAYWSNPKLNNTETFAEICRVKAGCVDTQTGKDIPFGTATGRSIAYQYKGYGAESKVSGFMEWGFNFRNTLTLQGVGEAV
AGVQMVSYRNDSDPVFKISNEWNRTTGLYLDLRPHLPFSPTTNISLAGRLDFSNAFDSKFIWKFGVRQPMGDFYVRANGG
TSYSLPKTNELFADSATTVGNPNLKPESTETYNGAIGFQKTSGSLNVSAEIGVFRTDITNRIQGTSGLTPNTYFNNTALT
QIRGITADFNLAIGEQWSINAGFTRQKAHLKGSTLQINETPEYMIQGTLAWNSPDQRWHVNLFPRYQGPEYATGGLNNSL
RHNFGNYLVVNGSLGWWAGEDRQHRFQVRVVNIFNEKYAERYGYGNQRFSSAFVRGEITTTSPNYFYGYPFEGKPRAVYV
SYTTAF

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79800; Mature: 79800

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS01159 WW_DOMAIN_1 ; PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTSIKRFALAGLMLAGSSLPVLAHAAEDQGNAPVEAEADADAARSGIVVTGQREKVTP
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECCCCCHHHHCCEEEECCCCCCCC
QAEQAAVYGNYVQVVGAEQIAASGASNFAELAQFLIKGANVGYSPDEGEYTIRLDGGGDR
CHHHHEEECCEEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
DTLVVLDGVPLYDRGPALEEIWGTTTIDPHMIEAVEVFRGGNSLFFGSNGGIGVVSIRTK
CEEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEC
RPDGTNRVELGASYGSFNSRELWGNARMALDGEGGAHSVMVYGSSQNTDGPRIFNPADFV
CCCCCCEEEEECCCCCCCCCEECCCEEEEEECCCCCEEEEEECCCCCCCCCEECCHHHHH
DNVRLAGGVQKYPLNRNNVGLKYRFKPSDATEVNLNAQYTQIEFFDAFPDNETYSPNRVR
HCCCCCCCCEECCCCCCCCCEEEEECCCCCEEEECCCEEEEEEEEECCCCCCCCCCCEEE
YPIIDASIIHKWSDALASQLDAYWSNPKLNNTETFAEICRVKAGCVDTQTGKDIPFGTAT
EEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GRSIAYQYKGYGAESKVSGFMEWGFNFRNTLTLQGVGEAVAGVQMVSYRNDSDPVFKISN
CCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHCEEEEEECCCCCCEEEECC
EWNRTTGLYLDLRPHLPFSPTTNISLAGRLDFSNAFDSKFIWKFGVRQPMGDFYVRANGG
CCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCC
TSYSLPKTNELFADSATTVGNPNLKPESTETYNGAIGFQKTSGSLNVSAEIGVFRTDITN
CEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECHHH
RIQGTSGLTPNTYFNNTALTQIRGITADFNLAIGEQWSINAGFTRQKAHLKGSTLQINET
HCCCCCCCCCCCEECCCEEEEEECCEEEEEEEECCEEECCCCCCCCCCCCCCCEEEECCC
PEYMIQGTLAWNSPDQRWHVNLFPRYQGPEYATGGLNNSLRHNFGNYLVVNGSLGWWAGE
CCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCC
DRQHRFQVRVVNIFNEKYAERYGYGNQRFSSAFVRGEITTTSPNYFYGYPFEGKPRAVYV
CCCEEEEEEEEEEHHHHHHHHCCCCCCHHHCEEEEEEEEECCCCEEEECCCCCCCCEEEE
SYTTAF
EEEECC
>Mature Secondary Structure
MFRTSIKRFALAGLMLAGSSLPVLAHAAEDQGNAPVEAEADADAARSGIVVTGQREKVTP
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEECCCCCHHHHCCEEEECCCCCCCC
QAEQAAVYGNYVQVVGAEQIAASGASNFAELAQFLIKGANVGYSPDEGEYTIRLDGGGDR
CHHHHEEECCEEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
DTLVVLDGVPLYDRGPALEEIWGTTTIDPHMIEAVEVFRGGNSLFFGSNGGIGVVSIRTK
CEEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEC
RPDGTNRVELGASYGSFNSRELWGNARMALDGEGGAHSVMVYGSSQNTDGPRIFNPADFV
CCCCCCEEEEECCCCCCCCCEECCCEEEEEECCCCCEEEEEECCCCCCCCCEECCHHHHH
DNVRLAGGVQKYPLNRNNVGLKYRFKPSDATEVNLNAQYTQIEFFDAFPDNETYSPNRVR
HCCCCCCCCEECCCCCCCCCEEEEECCCCCEEEECCCEEEEEEEEECCCCCCCCCCCEEE
YPIIDASIIHKWSDALASQLDAYWSNPKLNNTETFAEICRVKAGCVDTQTGKDIPFGTAT
EEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GRSIAYQYKGYGAESKVSGFMEWGFNFRNTLTLQGVGEAVAGVQMVSYRNDSDPVFKISN
CCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHCEEEEEECCCCCCEEEECC
EWNRTTGLYLDLRPHLPFSPTTNISLAGRLDFSNAFDSKFIWKFGVRQPMGDFYVRANGG
CCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCC
TSYSLPKTNELFADSATTVGNPNLKPESTETYNGAIGFQKTSGSLNVSAEIGVFRTDITN
CEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECHHH
RIQGTSGLTPNTYFNNTALTQIRGITADFNLAIGEQWSINAGFTRQKAHLKGSTLQINET
HCCCCCCCCCCCEECCCEEEEEECCEEEEEEEECCEEECCCCCCCCCCCCCCCEEEECCC
PEYMIQGTLAWNSPDQRWHVNLFPRYQGPEYATGGLNNSLRHNFGNYLVVNGSLGWWAGE
CCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCC
DRQHRFQVRVVNIFNEKYAERYGYGNQRFSSAFVRGEITTTSPNYFYGYPFEGKPRAVYV
CCCEEEEEEEEEEHHHHHHHHCCCCCCHHHCEEEEEEEEECCCCEEEECCCCCCCCEEEE
SYTTAF
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA