Click here to switch to the map view.

The map label for this gene is 87199477

Identifier: 87199477

GI number: 87199477

Start: 1500172

End: 1501404

Strand: Direct

Name: 87199477

Synonym: Saro_1457

Alternate gene names: NA

Gene position: 1500172-1501404 (Clockwise)

Preceding gene: 87199476

Following gene: 87199478

Centisome position: 42.12

GC content: 64.72

Gene sequence:

>1233_bases
ATGATGATACTGGAGTTGCATCGGCAGGGGCTGTCGGTGACGGCGATCGCGCGCCGAACCGGGCGCGATCCCAAGACCGT
GCGCAAATACATCGAGCGGGGCGTTGAGGTGCCGGCTTACGGTCCGCGTGTGGCGGGCCGGCCGAGCAAGATCGCGCCCT
ACATGGATTTCCTGCGCGAACGGGTGACGACATTCCCCGACCTGACCGCCTCGCGACTGACCCGCGAGATCAGGGAGATG
GGCTACGCCGGCGCCTACACGGCGGTGAAGCGCTATCTGGCGGCGATCCGGCCCGAGCATCCCAAGCCCTACGAGGTTCG
CTTCGAGACCAAGGCGGGCGTGCAGGGTCAGGTCGACTTCGCCCGCTTCGTAGTGGAGTTCACCGATGAGCCCGGTGTGG
CGCGCATCGTCTGGCTGTTCAGCATGGTGCTGGGCTACTCGCGCCTCCTGTTTGCCCGCTATGTGCTCCACCAGGATCTG
CAGACGCTGCTGCGCTGCCATATGCAGGCCTTCGAGGCCCTGGATGGTGTGCCGATCGAGATTCTCTACGACCGGATGAA
GACCGCGGTGACCGGCGAGGACGACCAGGGTCACATCGTCTACAATACCTCGCTGCTGGCTCTGGCGAAGCACTACCGGT
TCCAGCCCAGGGCCTGCCGGCCCTATCGCGCCAAAACGAAGGGAAAGGTCGAGCGACCCTTCCGCTACATCCGCGAGGAC
TTCTTCCTGGGGCGATCCTTCCGCAACATGGAGGATCTCAACGCCCAACTCATCGACTGGCTCGACACGGTCGCCAATGT
ACGGGTGCATGGCACGACCCAACGCGTGGTGACCGAGGCCTTCGCCGAGGAGCAGGAAGAGCTGCAGCGCTTGCCCGAGC
ACCGCTTCAACGCCGTCCTGAAGCTCGAGCGGCGGGTCAGCCATGACGGGCTCGTGGCGGTCGGCGGCAACTATTACAGC
GTGCCCGACCGAACGCGCCGGGTCGTCGAGATCGAGCAACTGCCGGATCTGATCCGTGTCATCGACCGCGGCATCGTTGT
TGCCGAACACCCGGTGCTGGAAGGGCGTCGACAATATCGCATCGATCAGCGTCATCGCACCGGACGACCTCAGCCGAGAA
TGCATGAGCGGCCGGTGACGACGATCGGCCGCATCGGTGACTATGTGCCACTGCGCTCGCTGGCCATCTATGAAGCGATC
GGCGCGGGCCTTGCCACGGAGGGTCGGCCATGA

Upstream 100 bases:

>100_bases
CCAATGTGCCGGGGTTAACCCCGGCACATTGGGCAATGCCAAAATCGGCGCGATGACCTCCTGGTGGGAGGCGCCGCCGA
TGATCCGACTTGGAGAAGCC

Downstream 100 bases:

>100_bases
ACGGCATCGCACCAGCCACGCGCATCGACTCCATCCGCCGGAGCCTGGTCAGCCTCAAGATGCCCCGGGCGCTCGAGATC
CTCGATGCGACCCTGCGGCG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MMILELHRQGLSVTAIARRTGRDPKTVRKYIERGVEVPAYGPRVAGRPSKIAPYMDFLRERVTTFPDLTASRLTREIREM
GYAGAYTAVKRYLAAIRPEHPKPYEVRFETKAGVQGQVDFARFVVEFTDEPGVARIVWLFSMVLGYSRLLFARYVLHQDL
QTLLRCHMQAFEALDGVPIEILYDRMKTAVTGEDDQGHIVYNTSLLALAKHYRFQPRACRPYRAKTKGKVERPFRYIRED
FFLGRSFRNMEDLNAQLIDWLDTVANVRVHGTTQRVVTEAFAEEQEELQRLPEHRFNAVLKLERRVSHDGLVAVGGNYYS
VPDRTRRVVEIEQLPDLIRVIDRGIVVAEHPVLEGRRQYRIDQRHRTGRPQPRMHERPVTTIGRIGDYVPLRSLAIYEAI
GAGLATEGRP

Sequences:

>Translated_410_residues
MMILELHRQGLSVTAIARRTGRDPKTVRKYIERGVEVPAYGPRVAGRPSKIAPYMDFLRERVTTFPDLTASRLTREIREM
GYAGAYTAVKRYLAAIRPEHPKPYEVRFETKAGVQGQVDFARFVVEFTDEPGVARIVWLFSMVLGYSRLLFARYVLHQDL
QTLLRCHMQAFEALDGVPIEILYDRMKTAVTGEDDQGHIVYNTSLLALAKHYRFQPRACRPYRAKTKGKVERPFRYIRED
FFLGRSFRNMEDLNAQLIDWLDTVANVRVHGTTQRVVTEAFAEEQEELQRLPEHRFNAVLKLERRVSHDGLVAVGGNYYS
VPDRTRRVVEIEQLPDLIRVIDRGIVVAEHPVLEGRRQYRIDQRHRTGRPQPRMHERPVTTIGRIGDYVPLRSLAIYEAI
GAGLATEGRP
>Mature_410_residues
MMILELHRQGLSVTAIARRTGRDPKTVRKYIERGVEVPAYGPRVAGRPSKIAPYMDFLRERVTTFPDLTASRLTREIREM
GYAGAYTAVKRYLAAIRPEHPKPYEVRFETKAGVQGQVDFARFVVEFTDEPGVARIVWLFSMVLGYSRLLFARYVLHQDL
QTLLRCHMQAFEALDGVPIEILYDRMKTAVTGEDDQGHIVYNTSLLALAKHYRFQPRACRPYRAKTKGKVERPFRYIRED
FFLGRSFRNMEDLNAQLIDWLDTVANVRVHGTTQRVVTEAFAEEQEELQRLPEHRFNAVLKLERRVSHDGLVAVGGNYYS
VPDRTRRVVEIEQLPDLIRVIDRGIVVAEHPVLEGRRQYRIDQRHRTGRPQPRMHERPVTTIGRIGDYVPLRSLAIYEAI
GAGLATEGRP

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 47312; Mature: 47312

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMILELHRQGLSVTAIARRTGRDPKTVRKYIERGVEVPAYGPRVAGRPSKIAPYMDFLRE
CEEEEEHHCCCCEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RVTTFPDLTASRLTREIREMGYAGAYTAVKRYLAAIRPEHPKPYEVRFETKAGVQGQVDF
HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHH
ARFVVEFTDEPGVARIVWLFSMVLGYSRLLFARYVLHQDLQTLLRCHMQAFEALDGVPIE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ILYDRMKTAVTGEDDQGHIVYNTSLLALAKHYRFQPRACRPYRAKTKGKVERPFRYIRED
HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FFLGRSFRNMEDLNAQLIDWLDTVANVRVHGTTQRVVTEAFAEEQEELQRLPEHRFNAVL
HHHCCHHCCHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLERRVSHDGLVAVGGNYYSVPDRTRRVVEIEQLPDLIRVIDRGIVVAEHPVLEGRRQYR
HHHHHCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHCCHHHHH
IDQRHRTGRPQPRMHERPVTTIGRIGDYVPLRSLAIYEAIGAGLATEGRP
HHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMILELHRQGLSVTAIARRTGRDPKTVRKYIERGVEVPAYGPRVAGRPSKIAPYMDFLRE
CEEEEEHHCCCCEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RVTTFPDLTASRLTREIREMGYAGAYTAVKRYLAAIRPEHPKPYEVRFETKAGVQGQVDF
HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHH
ARFVVEFTDEPGVARIVWLFSMVLGYSRLLFARYVLHQDLQTLLRCHMQAFEALDGVPIE
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ILYDRMKTAVTGEDDQGHIVYNTSLLALAKHYRFQPRACRPYRAKTKGKVERPFRYIRED
HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FFLGRSFRNMEDLNAQLIDWLDTVANVRVHGTTQRVVTEAFAEEQEELQRLPEHRFNAVL
HHHCCHHCCHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLERRVSHDGLVAVGGNYYSVPDRTRRVVEIEQLPDLIRVIDRGIVVAEHPVLEGRRQYR
HHHHHCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHCCHHHHH
IDQRHRTGRPQPRMHERPVTTIGRIGDYVPLRSLAIYEAIGAGLATEGRP
HHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]