| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87199405
Identifier: 87199405
GI number: 87199405
Start: 1429739
End: 1430173
Strand: Direct
Name: 87199405
Synonym: Saro_1384
Alternate gene names: NA
Gene position: 1429739-1430173 (Clockwise)
Preceding gene: 87199404
Following gene: 87199406
Centisome position: 40.14
GC content: 70.8
Gene sequence:
>435_bases ATGCCGGCTGACAACAGGCCCCCGATCCGCGCTCCGATCCGCGCCCCGATCCGGGCCCCGATCCGCGCCCACGCCAACGG CTTCACCCTGCTCGAGCTTCTGGTCGCGCTCGCGGTCTTTGCCATCGCAGCCCTGGCGCTGCTCCAGATGGAGGGCGCCA GCATTGCGCGAACCGCGGACCTCGACCAGCGCCTGCTGCGCGAGATCGTCGCACAGAACATGGCGGCCGAGATCCTGAGC GATCCCGCCCCGCCGCCGGTCGGCTCGGCCAGCGGGACCATCGAGAATGCCGGCCGCCGCTTCCAGTGGACGCGCACCGT TGCGCGACGGGCTGACTTCGGCGTTCTGGGGATCACCCTTTCCGTCCGCGAGACGACGCCGGGTGCGCAGAGCCAGGCCT TTTCGCTCGATTTCACCCGGCTCCCCGCGGCATGA
Upstream 100 bases:
>100_bases GATTCGCTGGGCCTGGCCAGCAGCGAGGCAGCGGTGCGGCTGGACCGGGGCGGGCAAGTGCTCGTCGTACATGTCCGCCG TGATGGCAAGGTGACTGTCG
Downstream 100 bases:
>100_bases GCGAAACGCCCGTCCGCAACGGCTTTACGCTTGTCGAGATGCTGATCGCGCTGGCGCTTTTCGCGGTCATCGCGGTTGGC GCGCTCGGACTGCTGCGCTT
Product: general secretion pathway protein I
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulI
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MPADNRPPIRAPIRAPIRAPIRAHANGFTLLELLVALAVFAIAALALLQMEGASIARTADLDQRLLREIVAQNMAAEILS DPAPPPVGSASGTIENAGRRFQWTRTVARRADFGVLGITLSVRETTPGAQSQAFSLDFTRLPAA
Sequences:
>Translated_144_residues MPADNRPPIRAPIRAPIRAPIRAHANGFTLLELLVALAVFAIAALALLQMEGASIARTADLDQRLLREIVAQNMAAEILS DPAPPPVGSASGTIENAGRRFQWTRTVARRADFGVLGITLSVRETTPGAQSQAFSLDFTRLPAA >Mature_143_residues PADNRPPIRAPIRAPIRAPIRAHANGFTLLELLVALAVFAIAALALLQMEGASIARTADLDQRLLREIVAQNMAAEILSD PAPPPVGSASGTIENAGRRFQWTRTVARRADFGVLGITLSVRETTPGAQSQAFSLDFTRLPAA
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15348; Mature: 15217
Theoretical pI: Translated: 11.69; Mature: 11.69
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPADNRPPIRAPIRAPIRAPIRAHANGFTLLELLVALAVFAIAALALLQMEGASIARTAD CCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LDQRLLREIVAQNMAAEILSDPAPPPVGSASGTIENAGRRFQWTRTVARRADFGVLGITL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEE SVRETTPGAQSQAFSLDFTRLPAA EEECCCCCCCCCEEECCHHCCCCC >Mature Secondary Structure PADNRPPIRAPIRAPIRAPIRAHANGFTLLELLVALAVFAIAALALLQMEGASIARTAD CCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LDQRLLREIVAQNMAAEILSDPAPPPVGSASGTIENAGRRFQWTRTVARRADFGVLGITL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCEEEEEE SVRETTPGAQSQAFSLDFTRLPAA EEECCCCCCCCCEEECCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA