Click here to switch to the map view.

The map label for this gene is nodD [H]

Identifier: 87199249

GI number: 87199249

Start: 1279961

End: 1280869

Strand: Direct

Name: nodD [H]

Synonym: Saro_1227

Alternate gene names: 87199249

Gene position: 1279961-1280869 (Clockwise)

Preceding gene: 87199248

Following gene: 87199253

Centisome position: 35.94

GC content: 66.12

Gene sequence:

>909_bases
ATGCGTTTCAAGGGTCTCGATCTAAACCTGCTCGTCGTGTTCGATGCGCTGATGGAAACGCGCAGCGTGACCCGCGCGGC
GGAGCGGATCGGGTTGACCCAGCCCGCGACGAGTGCCGCGCTGCGCCGCTTGCGCGACTATTTCAGGGACGAGATTGTCG
TCGCCGTTGGCAAGCGGATGCATCCCACGCCATTCGCCGAGGCGTTGCACCCTCAGATACAGCAGGCCCTGCGCAGGGTC
GAGCGGGCGATCTCGATGCCGACCGAGTTCGATCCGTCGACGTCGACCCGCCGCTTCCGCATCATCGGTTCGGACTACAT
CATGGTCGCCGTGCTGGTACCGCTGATCGAACGCTTCGCCCGCACCGCGCCCGGCGTGCGTATCGAGATCATCCAGCCCA
ACGAACACAGCGTAGCCGAACTCGAAGCGGGAAGGGCAGACCTGCTGGTCACGCCCGAGCCCTTCCTCGCCTCGTGGCAC
CCTAGCGAGGTGCTTTTCGACGAGGAGCAGGTGGTCGTCGGCTGGGCGCAGAACCCGATCTTTGCGCGGGGGGTGACCGC
AGACGACTTCTACGCGGCCGGTCATGTGACCGTCGCGTTCGGCGCGAACCGCACGCCGGCCTTCGCGGATTCCGCGCTCA
GCCGCATGGGGCGCGAGCGGCGGGTCGAGGTGACGGTCGGCAGCTTCGCTTCCGCACCGTGGTTCATTGAAGGCACCTCG
CGCCTTGCCGTGCTGCACGAGCGGCTGGTCCGCCAGATCGCACGCCGTTTCAACCTGGCCTGGGCGCGGATGCCGTTCGA
TTTCCCGACCATGCAGGAAATGATGCAGTTCCATGAGGCGCGTGCCGAAGACGCCGGGCTGGCATGGCTTCGTCAGCAGA
TGCGCGAGGTCGCTTCCGAGAACGCCTGA

Upstream 100 bases:

>100_bases
CACGTTCACATTGAGGTGCGCGGGGCACTTCACAATCCATCGCAATTGTGGTCATGCCCCCCCATCAATCACTCCATGAT
TGAATCGGAGCTTTCCGCCG

Downstream 100 bases:

>100_bases
TATGTCGGTCAGTGCGAGACGCGCCGCGCCCGCTTGATCGTGCCCGAATAGGACAGGACGGGCGTCTCGCCGCAGAAGAT
CGTGCCTCTTGCGAAGACGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRFKGLDLNLLVVFDALMETRSVTRAAERIGLTQPATSAALRRLRDYFRDEIVVAVGKRMHPTPFAEALHPQIQQALRRV
ERAISMPTEFDPSTSTRRFRIIGSDYIMVAVLVPLIERFARTAPGVRIEIIQPNEHSVAELEAGRADLLVTPEPFLASWH
PSEVLFDEEQVVVGWAQNPIFARGVTADDFYAAGHVTVAFGANRTPAFADSALSRMGRERRVEVTVGSFASAPWFIEGTS
RLAVLHERLVRQIARRFNLAWARMPFDFPTMQEMMQFHEARAEDAGLAWLRQQMREVASENA

Sequences:

>Translated_302_residues
MRFKGLDLNLLVVFDALMETRSVTRAAERIGLTQPATSAALRRLRDYFRDEIVVAVGKRMHPTPFAEALHPQIQQALRRV
ERAISMPTEFDPSTSTRRFRIIGSDYIMVAVLVPLIERFARTAPGVRIEIIQPNEHSVAELEAGRADLLVTPEPFLASWH
PSEVLFDEEQVVVGWAQNPIFARGVTADDFYAAGHVTVAFGANRTPAFADSALSRMGRERRVEVTVGSFASAPWFIEGTS
RLAVLHERLVRQIARRFNLAWARMPFDFPTMQEMMQFHEARAEDAGLAWLRQQMREVASENA
>Mature_302_residues
MRFKGLDLNLLVVFDALMETRSVTRAAERIGLTQPATSAALRRLRDYFRDEIVVAVGKRMHPTPFAEALHPQIQQALRRV
ERAISMPTEFDPSTSTRRFRIIGSDYIMVAVLVPLIERFARTAPGVRIEIIQPNEHSVAELEAGRADLLVTPEPFLASWH
PSEVLFDEEQVVVGWAQNPIFARGVTADDFYAAGHVTVAFGANRTPAFADSALSRMGRERRVEVTVGSFASAPWFIEGTS
RLAVLHERLVRQIARRFNLAWARMPFDFPTMQEMMQFHEARAEDAGLAWLRQQMREVASENA

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=301, Percent_Identity=25.5813953488372, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1786820, Length=158, Percent_Identity=32.2784810126582, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081766, Length=271, Percent_Identity=22.140221402214, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790147, Length=313, Percent_Identity=20.7667731629393, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34117; Mature: 34117

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVVFDALMETRSVTRAAERIGLTQPATSAALRRLRDYFRDEIVVAVGKRM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
HPTPFAEALHPQIQQALRRVERAISMPTEFDPSTSTRRFRIIGSDYIMVAVLVPLIERFA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
RTAPGVRIEIIQPNEHSVAELEAGRADLLVTPEPFLASWHPSEVLFDEEQVVVGWAQNPI
HCCCCCEEEEECCCCCCHHHHCCCCCCEEECCCHHHCCCCCCHHEECCCEEEEEECCCCE
FARGVTADDFYAAGHVTVAFGANRTPAFADSALSRMGRERRVEVTVGSFASAPWFIEGTS
EECCCCCCCCEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCH
RLAVLHERLVRQIARRFNLAWARMPFDFPTMQEMMQFHEARAEDAGLAWLRQQMREVASE
HHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NA
CC
>Mature Secondary Structure
MRFKGLDLNLLVVFDALMETRSVTRAAERIGLTQPATSAALRRLRDYFRDEIVVAVGKRM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
HPTPFAEALHPQIQQALRRVERAISMPTEFDPSTSTRRFRIIGSDYIMVAVLVPLIERFA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
RTAPGVRIEIIQPNEHSVAELEAGRADLLVTPEPFLASWHPSEVLFDEEQVVVGWAQNPI
HCCCCCEEEEECCCCCCHHHHCCCCCCEEECCCHHHCCCCCCHHEECCCEEEEEECCCCE
FARGVTADDFYAAGHVTVAFGANRTPAFADSALSRMGRERRVEVTVGSFASAPWFIEGTS
EECCCCCCCCEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCH
RLAVLHERLVRQIARRFNLAWARMPFDFPTMQEMMQFHEARAEDAGLAWLRQQMREVASE
HHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
NA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]