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The map label for this gene is allR [C]

Identifier: 87199248

GI number: 87199248

Start: 1279093

End: 1279842

Strand: Direct

Name: allR [C]

Synonym: Saro_1226

Alternate gene names: 87199248

Gene position: 1279093-1279842 (Clockwise)

Preceding gene: 87199242

Following gene: 87199249

Centisome position: 35.91

GC content: 69.07

Gene sequence:

>750_bases
ATGTCCGGTCCCGTCCATTCCGTCAGCCAGGCGTTCGCCATCCTGCGCCACCTTGCGCAGGCCGGCGGGCCGCAGACCTT
GACCGACGTCTGTCGCGCGCTCGATCTCAGCCCGTCGAGCGGCCTCAATCTGCTGCGCACGCTTCTTGCCGAGCAGGCCA
TCACCCGTGACGCCGATGGCAAGCGCTATACGCTCTCACCCGGTTGGCAGGGCCTTGCCGTGCTGCGCGACGACGCGGCC
ATGGTGATTGCAGCCGTCCGTCCGCTGCTGTCTCGGCTGGCGGAAGAGCAGGATGCCGCCGTCGGCCTCTGGCAGGTGCA
GCCCGGGGACCGCCTGGCCCTCGTGGCGCTTGGCGAAAGCGGGGCGGCAACGCGCATCCACATGGTCGAGGGGCAGCGCC
AGCCGCTCGGTTCGGGAGCCTCCGGGCGCGCAATTGCCGCTTATGAAAACCCGGGCGAGAAGGAACTCCAGCGTCGCTTT
GCCAAGGTGCGATGGCGCCGGCCGCTCACTTATCCCGCGTGGGCGCAACAGATCGGTCGTGCCGCGCGCGACGGCTATGC
AATCGACGATGGCTTCGGCCATCCTGGCATTTGCTCCATCAGCGCCGTAGTTCCGCCTCATGCGCCGGGCGACCCGGTCC
GGTTCTGCGTCAGCGCGTCGGTATTCGCTGCGTCGCGCGATGCGCGGCAGATCGCGGCGCTGGGCGAAGGCCTGCTGCGC
CTTGCAGCCGACCCGGCCTTTGCCTTGTGA

Upstream 100 bases:

>100_bases
GAATCTCCAGTTTCAGTTCTTCGGCTGACGCTAACCGCACAGTTAACAGTTTTCAACATCGAGAATTGCTTTTCATAATG
ATGAAAAGTATCATCGCGCC

Downstream 100 bases:

>100_bases
CGCCTATGTCTTGAACGGCACGTTCACATTGAGGTGCGCGGGGCACTTCACAATCCATCGCAATTGTGGTCATGCCCCCC
CATCAATCACTCCATGATTG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator Family Protein; IclR Helix-Turn-Helix Domain Family

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSGPVHSVSQAFAILRHLAQAGGPQTLTDVCRALDLSPSSGLNLLRTLLAEQAITRDADGKRYTLSPGWQGLAVLRDDAA
MVIAAVRPLLSRLAEEQDAAVGLWQVQPGDRLALVALGESGAATRIHMVEGQRQPLGSGASGRAIAAYENPGEKELQRRF
AKVRWRRPLTYPAWAQQIGRAARDGYAIDDGFGHPGICSISAVVPPHAPGDPVRFCVSASVFAASRDARQIAALGEGLLR
LAADPAFAL

Sequences:

>Translated_249_residues
MSGPVHSVSQAFAILRHLAQAGGPQTLTDVCRALDLSPSSGLNLLRTLLAEQAITRDADGKRYTLSPGWQGLAVLRDDAA
MVIAAVRPLLSRLAEEQDAAVGLWQVQPGDRLALVALGESGAATRIHMVEGQRQPLGSGASGRAIAAYENPGEKELQRRF
AKVRWRRPLTYPAWAQQIGRAARDGYAIDDGFGHPGICSISAVVPPHAPGDPVRFCVSASVFAASRDARQIAALGEGLLR
LAADPAFAL
>Mature_248_residues
SGPVHSVSQAFAILRHLAQAGGPQTLTDVCRALDLSPSSGLNLLRTLLAEQAITRDADGKRYTLSPGWQGLAVLRDDAAM
VIAAVRPLLSRLAEEQDAAVGLWQVQPGDRLALVALGESGAATRIHMVEGQRQPLGSGASGRAIAAYENPGEKELQRRFA
KVRWRRPLTYPAWAQQIGRAARDGYAIDDGFGHPGICSISAVVPPHAPGDPVRFCVSASVFAASRDARQIAALGEGLLRL
AADPAFAL

Specific function: Negative Regulator Of Allantoin And Glyoxylate Utilization Operons. [C]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26355; Mature: 26224

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPVHSVSQAFAILRHLAQAGGPQTLTDVCRALDLSPSSGLNLLRTLLAEQAITRDADG
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
KRYTLSPGWQGLAVLRDDAAMVIAAVRPLLSRLAEEQDAAVGLWQVQPGDRLALVALGES
CEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCC
GAATRIHMVEGQRQPLGSGASGRAIAAYENPGEKELQRRFAKVRWRRPLTYPAWAQQIGR
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AARDGYAIDDGFGHPGICSISAVVPPHAPGDPVRFCVSASVFAASRDARQIAALGEGLLR
HHHCCCEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAADPAFAL
HHCCCCCCC
>Mature Secondary Structure 
SGPVHSVSQAFAILRHLAQAGGPQTLTDVCRALDLSPSSGLNLLRTLLAEQAITRDADG
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
KRYTLSPGWQGLAVLRDDAAMVIAAVRPLLSRLAEEQDAAVGLWQVQPGDRLALVALGES
CEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCC
GAATRIHMVEGQRQPLGSGASGRAIAAYENPGEKELQRRFAKVRWRRPLTYPAWAQQIGR
CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AARDGYAIDDGFGHPGICSISAVVPPHAPGDPVRFCVSASVFAASRDARQIAALGEGLLR
HHHCCCEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAADPAFAL
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA