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The map label for this gene is arpC [H]

Identifier: 87199242

GI number: 87199242

Start: 1271788

End: 1273191

Strand: Direct

Name: arpC [H]

Synonym: Saro_1220

Alternate gene names: 87199242

Gene position: 1271788-1273191 (Clockwise)

Preceding gene: 87199241

Following gene: 87199248

Centisome position: 35.71

GC content: 67.95

Gene sequence:

>1404_bases
ATGAACATGCGCCCGATCCTCGCCGCGCTTCCGGCACTGGCGCTCGCGGGTTGCAATCTTGCGCCCAAGTACGTGCAGCC
CGCTGCGCCGGTGCCGCCGGCTCTGCCGCAAGGCGGAGCCTACCCCGGTCTAGCCCCCGGCGAGACGGACGCCGATGCGC
TGGGCTGGCGCGATTTCTTTGCCGATGCACGCCTGCAGCAGGTGATCGCCAAGGCTCTTGCCGACAACCGCAACCTGCGC
GCGACGCTTGCCAACGTAGAGCGGGCGAGGGCGCTCTACCGTGTGGACCGCGCGGCGCTGTTCCCCATCGTCAACGCGAC
CGGCACGCTGTCGGCGGTGCAGGGCACCGCAGGGCGGGTGACCGACAACTTCCTCGTCCAGGCGGGGACCAGTGCCTACG
AGATCGACCTGTGGGGCCGGCTTCGCAACCAGAGCCAGAGTGCGTTCGAAAGCTATCTCGCGACGGACGAAGGGCGCAAG
GCAACGCAGATCGCGCTGGTGGCCGAAACAGCAAGCGCGTGGCTGTCCTATGCGGCCACCGCCGATGCCCTGCGCATTGC
CGAGGAAACCGTGGCATCCCGGCGCAGGACGCTCGACGTCAATGTCCGGCGCGAAGCCAACGGGATCGGTACGAAGCTTG
ACGTGGCCACGGCGACCACGGCGCTCAACAGCGCCGAAGCCGCAGTGGCAGACTTCCGCACCAGCCTGGCCCAGGCTCGC
AATGCGCTGGAACTGATCGCGGGCGGTCCGTTACCGGACGAGCTTCTGCCTTCGACGTTAGGCGAGGGCGACCAGGTTCG
CGCCGAGCTGCCCGTCGGCCTGTCCTCGCAGGTGCTGCTGCGCAGGCCCGACGTTCTCGCTGCGGAGCACGACCTGAAGG
CGACCTACGCCGACATTGGCGCGGCGCGGGCGGCGTTCTTTCCGACGCTATCGCTAACCGGCTTGTTCGGGTTCGCCAGT
TCCGGGCTGACGAGCATCTTCAGCGGTGGCGACTTCCAGAAGACGGCCAATGCGGCCTTGCGCCAGCGGATCTTCGATGG
CGGGGCGACGGCGGGCAATCTTGCGGCGGCCAAGGCCGCGCGCGATGCGGCGCTCGCGACCTATGAGAGGACGATCCAGA
CGGCCTTCCGCGAAGTGGCGGACGCGCTGGCGCGGCGCGGGACCATCGACGAGAGTGTGAGGGCGCAGACTTCGCTCGAG
GCCAATGCGGCGACCGCGTACCGCCTGAGCCAGTCACGCTACGATGCCGGTGTTGCCAGCTATCTCGAACCGCTCGACGC
CCAGCGCACGCTCTACAATGCGCGGCAGTCGCTGGTTTCGGTGCGGCTCACGAAAGCGAGCAACATGGTCGAGCTGTACC
GTGCGCTGGGAGGCGGATTGGTGGAAGTGACGAAGCCTCAGTAG

Upstream 100 bases:

>100_bases
CAATTCTGGCGATCTTCCTCGTGCCACTGTTCTTCGTGCTGGTGAAGGGCTGGTTCCGCCGCAAGCCCGCCACGCCCGTC
GAAACCGTGGGAGAGCCCGC

Downstream 100 bases:

>100_bases
CTGCGGGGCAGGCCCAGAACGTGTTCGGCCAGGAACGACAGGATCAGGTTCGTGCTGATCGGCGCCACCTGGTAGAGCCG
GGTCTCGCGCAGCTTGCGTT

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MNMRPILAALPALALAGCNLAPKYVQPAAPVPPALPQGGAYPGLAPGETDADALGWRDFFADARLQQVIAKALADNRNLR
ATLANVERARALYRVDRAALFPIVNATGTLSAVQGTAGRVTDNFLVQAGTSAYEIDLWGRLRNQSQSAFESYLATDEGRK
ATQIALVAETASAWLSYAATADALRIAEETVASRRRTLDVNVRREANGIGTKLDVATATTALNSAEAAVADFRTSLAQAR
NALELIAGGPLPDELLPSTLGEGDQVRAELPVGLSSQVLLRRPDVLAAEHDLKATYADIGAARAAFFPTLSLTGLFGFAS
SGLTSIFSGGDFQKTANAALRQRIFDGGATAGNLAAAKAARDAALATYERTIQTAFREVADALARRGTIDESVRAQTSLE
ANAATAYRLSQSRYDAGVASYLEPLDAQRTLYNARQSLVSVRLTKASNMVELYRALGGGLVEVTKPQ

Sequences:

>Translated_467_residues
MNMRPILAALPALALAGCNLAPKYVQPAAPVPPALPQGGAYPGLAPGETDADALGWRDFFADARLQQVIAKALADNRNLR
ATLANVERARALYRVDRAALFPIVNATGTLSAVQGTAGRVTDNFLVQAGTSAYEIDLWGRLRNQSQSAFESYLATDEGRK
ATQIALVAETASAWLSYAATADALRIAEETVASRRRTLDVNVRREANGIGTKLDVATATTALNSAEAAVADFRTSLAQAR
NALELIAGGPLPDELLPSTLGEGDQVRAELPVGLSSQVLLRRPDVLAAEHDLKATYADIGAARAAFFPTLSLTGLFGFAS
SGLTSIFSGGDFQKTANAALRQRIFDGGATAGNLAAAKAARDAALATYERTIQTAFREVADALARRGTIDESVRAQTSLE
ANAATAYRLSQSRYDAGVASYLEPLDAQRTLYNARQSLVSVRLTKASNMVELYRALGGGLVEVTKPQ
>Mature_467_residues
MNMRPILAALPALALAGCNLAPKYVQPAAPVPPALPQGGAYPGLAPGETDADALGWRDFFADARLQQVIAKALADNRNLR
ATLANVERARALYRVDRAALFPIVNATGTLSAVQGTAGRVTDNFLVQAGTSAYEIDLWGRLRNQSQSAFESYLATDEGRK
ATQIALVAETASAWLSYAATADALRIAEETVASRRRTLDVNVRREANGIGTKLDVATATTALNSAEAAVADFRTSLAQAR
NALELIAGGPLPDELLPSTLGEGDQVRAELPVGLSSQVLLRRPDVLAAEHDLKATYADIGAARAAFFPTLSLTGLFGFAS
SGLTSIFSGGDFQKTANAALRQRIFDGGATAGNLAAAKAARDAALATYERTIQTAFREVADALARRGTIDESVRAQTSLE
ANAATAYRLSQSRYDAGVASYLEPLDAQRTLYNARQSLVSVRLTKASNMVELYRALGGGLVEVTKPQ

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=464, Percent_Identity=36.8534482758621, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI2367348, Length=329, Percent_Identity=24.6200607902736, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 49311; Mature: 49311

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMRPILAALPALALAGCNLAPKYVQPAAPVPPALPQGGAYPGLAPGETDADALGWRDFF
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ADARLQQVIAKALADNRNLRATLANVERARALYRVDRAALFPIVNATGTLSAVQGTAGRV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
TDNFLVQAGTSAYEIDLWGRLRNQSQSAFESYLATDEGRKATQIALVAETASAWLSYAAT
CCCHHEECCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHH
ADALRIAEETVASRRRTLDVNVRREANGIGTKLDVATATTALNSAEAAVADFRTSLAQAR
HHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
NALELIAGGPLPDELLPSTLGEGDQVRAELPVGLSSQVLLRRPDVLAAEHDLKATYADIG
HHHHHHCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCHHCCCHHHHHHHHHHH
AARAAFFPTLSLTGLFGFASSGLTSIFSGGDFQKTANAALRQRIFDGGATAGNLAAAKAA
HHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RDAALATYERTIQTAFREVADALARRGTIDESVRAQTSLEANAATAYRLSQSRYDAGVAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YLEPLDAQRTLYNARQSLVSVRLTKASNMVELYRALGGGLVEVTKPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MNMRPILAALPALALAGCNLAPKYVQPAAPVPPALPQGGAYPGLAPGETDADALGWRDFF
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ADARLQQVIAKALADNRNLRATLANVERARALYRVDRAALFPIVNATGTLSAVQGTAGRV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
TDNFLVQAGTSAYEIDLWGRLRNQSQSAFESYLATDEGRKATQIALVAETASAWLSYAAT
CCCHHEECCCCEEEEEHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHH
ADALRIAEETVASRRRTLDVNVRREANGIGTKLDVATATTALNSAEAAVADFRTSLAQAR
HHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
NALELIAGGPLPDELLPSTLGEGDQVRAELPVGLSSQVLLRRPDVLAAEHDLKATYADIG
HHHHHHCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHCCCCHHCCCHHHHHHHHHHH
AARAAFFPTLSLTGLFGFASSGLTSIFSGGDFQKTANAALRQRIFDGGATAGNLAAAKAA
HHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RDAALATYERTIQTAFREVADALARRGTIDESVRAQTSLEANAATAYRLSQSRYDAGVAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
YLEPLDAQRTLYNARQSLVSVRLTKASNMVELYRALGGGLVEVTKPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]