| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199078
Identifier: 87199078
GI number: 87199078
Start: 1097844
End: 1098842
Strand: Reverse
Name: 87199078
Synonym: Saro_1056
Alternate gene names: NA
Gene position: 1098842-1097844 (Counterclockwise)
Preceding gene: 87199079
Following gene: 87199077
Centisome position: 30.85
GC content: 70.97
Gene sequence:
>999_bases ATGTCCGCTGAATGGCTGGTCGAACAGGGGATTGGCGAGACCCGCGCCATCCTCTGCGCCGACGCTGAAATCCGCGCTGC CCGCATCGACTGGGGCGAGGCCCTGCGCCCCGGTCTAGTGGCCGAAGCCCGCCTCGTCTCGCGCCCGGCCGGAGGACGTC GCGGCACCGTCCGCCTCGACAGCGGCGATGACGCGCTGATCGATCAGCTCCCGCGCGAGGCGACCGAGGGCGTCCGGCTG GTCGTGCGCGTCGTGCGCGCCTCGATTGCGGAAAAGGGACGCACCAAGCTCCCCGTGGTCCGCGTCGCCCCCGGCGAAGT GCCCACGCCGGCGCCGGATCTCGCCGCCCGGCTCGGCGCGGCCGGGGACCATGTCCGCATCCTTCCCGCCACCGACCGCA CCTTTGTCGAATGTGGCTGGGACGAACTTGTGGAACAGGCGCAGAGCGGCGAGATTCCCTTTGCCGGCGGCTCGCTGCTG GTCAGCCCGACCCCGGCCATGACCCTGATCGACGTCGATGGCTTCGGCCAGCCCGCGCAGCTCGCCCTTGCGGCTGTGCC GGCCATCGCCGGCGCGCTGATGCGCCTGGACATCGGCGGCAACGTTGGCATCGATTTCCCCACCGTGCAGGACCGCAAGG ACCGCCAGGCCATTGACGCCGCGCTCGAGGCCGCGCTCGCGGAAGCCGGCTGGCGGGGCGAGCGGACAGGAATGAACGGG TTCGGCTTCGTCCAGCTCGTCTCCCGGCTCGAACGTCCCTCGCTCGTTGCGCGATACGCACGCAACCCGGCAGCCGCCAG TGCTCGCATCCTGCTACGCCAGGCAGAGCGCGTGGCAGAGCCTGGCGCACTGCTGCTCTGCGCAAATCCGCGTACCCTCG ATGCAATGCGGCCCGACTGGCTTGAGGAACTCGCACGCCGCACCGGTCGGGTCGTGCGGCTTGCACCCGATCCGGCCCTT GCCCTTTCCGGCGGTTTCGCGCAGGCGGTGCCGCTATGA
Upstream 100 bases:
>100_bases AGCGCCGAAGGTTTCTGCGCCTGGCTGTCGGGGAGCCATTCGGGCGTGGTCGGCCTGCCCCTCTACGAAACGCGCCGCCT CCTTCGCGCTGCCGGACTCG
Downstream 100 bases:
>100_bases CCATTCCCGCCGCCAAGCCCGGAAAGCGCTGCCCGATCTGCGGCAAGCCTCGCTCCGAAGCCCACAGCCCGTTCTGCTCC ACCCGCTGCCGCGACCGCGA
Product: ribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MSAEWLVEQGIGETRAILCADAEIRAARIDWGEALRPGLVAEARLVSRPAGGRRGTVRLDSGDDALIDQLPREATEGVRL VVRVVRASIAEKGRTKLPVVRVAPGEVPTPAPDLAARLGAAGDHVRILPATDRTFVECGWDELVEQAQSGEIPFAGGSLL VSPTPAMTLIDVDGFGQPAQLALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWRGERTGMNG FGFVQLVSRLERPSLVARYARNPAAASARILLRQAERVAEPGALLLCANPRTLDAMRPDWLEELARRTGRVVRLAPDPAL ALSGGFAQAVPL
Sequences:
>Translated_332_residues MSAEWLVEQGIGETRAILCADAEIRAARIDWGEALRPGLVAEARLVSRPAGGRRGTVRLDSGDDALIDQLPREATEGVRL VVRVVRASIAEKGRTKLPVVRVAPGEVPTPAPDLAARLGAAGDHVRILPATDRTFVECGWDELVEQAQSGEIPFAGGSLL VSPTPAMTLIDVDGFGQPAQLALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWRGERTGMNG FGFVQLVSRLERPSLVARYARNPAAASARILLRQAERVAEPGALLLCANPRTLDAMRPDWLEELARRTGRVVRLAPDPAL ALSGGFAQAVPL >Mature_331_residues SAEWLVEQGIGETRAILCADAEIRAARIDWGEALRPGLVAEARLVSRPAGGRRGTVRLDSGDDALIDQLPREATEGVRLV VRVVRASIAEKGRTKLPVVRVAPGEVPTPAPDLAARLGAAGDHVRILPATDRTFVECGWDELVEQAQSGEIPFAGGSLLV SPTPAMTLIDVDGFGQPAQLALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWRGERTGMNGF GFVQLVSRLERPSLVARYARNPAAASARILLRQAERVAEPGALLLCANPRTLDAMRPDWLEELARRTGRVVRLAPDPALA LSGGFAQAVPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35162; Mature: 35031
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEWLVEQGIGETRAILCADAEIRAARIDWGEALRPGLVAEARLVSRPAGGRRGTVRLD CCCCHHHHCCCCCCEEEEEECCCEEEEECCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEC SGDDALIDQLPREATEGVRLVVRVVRASIAEKGRTKLPVVRVAPGEVPTPAPDLAARLGA CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCC AGDHVRILPATDRTFVECGWDELVEQAQSGEIPFAGGSLLVSPTPAMTLIDVDGFGQPAQ CCCCEEEEECCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCHHH LALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWRGERTGMNG HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC FGFVQLVSRLERPSLVARYARNPAAASARILLRQAERVAEPGALLLCANPRTLDAMRPDW HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHH LEELARRTGRVVRLAPDPALALSGGFAQAVPL HHHHHHHCCCEEEECCCCCEEECCCCHHCCCC >Mature Secondary Structure SAEWLVEQGIGETRAILCADAEIRAARIDWGEALRPGLVAEARLVSRPAGGRRGTVRLD CCCHHHHCCCCCCEEEEEECCCEEEEECCHHHHHCCCHHHHHHHHHCCCCCCCCEEEEC SGDDALIDQLPREATEGVRLVVRVVRASIAEKGRTKLPVVRVAPGEVPTPAPDLAARLGA CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCC AGDHVRILPATDRTFVECGWDELVEQAQSGEIPFAGGSLLVSPTPAMTLIDVDGFGQPAQ CCCCEEEEECCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCHHH LALAAVPAIAGALMRLDIGGNVGIDFPTVQDRKDRQAIDAALEAALAEAGWRGERTGMNG HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC FGFVQLVSRLERPSLVARYARNPAAASARILLRQAERVAEPGALLLCANPRTLDAMRPDW HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHH LEELARRTGRVVRLAPDPALALSGGFAQAVPL HHHHHHHCCCEEEECCCCCEEECCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA