| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is aat
Identifier: 87198848
GI number: 87198848
Start: 879049
End: 879840
Strand: Reverse
Name: aat
Synonym: Saro_0826
Alternate gene names: 87198848
Gene position: 879840-879049 (Counterclockwise)
Preceding gene: 87198851
Following gene: 87198843
Centisome position: 24.7
GC content: 66.92
Gene sequence:
>792_bases ATGTCGCGCATCGAACCCCACGCCATCCCGCCGGAGCTTCTGCTCAAGGCCTATCGCGCAGGCATCTTCCCGATGGCCGA CAGCCGCGACGACCCGGAGGTGTTCTGGGTCGAGCCAAAGATGCGCGCAATTCTGCCGCTCGAAGGCTTCCATCTGTCCC GGTCGCTTGCCCGGACCCTGCGCCGCGGCAAGTTCACCGTGACCTGCAATGCCGCGTTCGAGGCGGTCATCGATGCCTGC GCCGCGCCGCGCCCCGGTGCCGAGGAAAGCTGGATCAGCGCCCGCATCCGCGAAAGCTACATTGGCCTGCACGAACATGG CCACGCCCATTCGATCGAATGCTGGCACAACGGGCGACTGGTCGGCGGACTATACGGCGTAGGCTTCGCGCGGGTTTTCT GCGGCGAATCGATGTTCAGCCGCGAACCGGACGCGTCGAAGGTGGCGCTTGCATGGCTTGTCGCTTCACTGCGCAAGGTC GGTGCCGAACTGCTCGACTGCCAGTTCACCACCCCGCATCTCGCTTCACTGGGCGCGGTGGAAATCCCGCAATCGCAGTA CCTTCAACTTCTGTCGAAGGCGCAGCGACCCTATTCGTCGGGCGAGCTTGCGGCAGCGCGGGCGCTGGCCGATGCCGTCG GCGACGGGCTAGGCATTGGCGGCGCCGGCGTCGTCAAGGGCGATGCCGCGGCGCTCGGGCTGCCGGCGGGTTTTGCCGCG CTGCGGGCCGAAGGCGCCGGCTCTTCCTCGCCGGGGAACGTCATCGCGCAGTCCTTGACCCACACGTCATAG
Upstream 100 bases:
>100_bases ACCGATGCTCTACCAACTGAGCTACACTCCTGTGCTCGGGTTGGCCCCTTAGAGGGTTGACGCGGGGAGCGCAACCGACC GAAACACATTATTGATCATT
Downstream 100 bases:
>100_bases ACCGGGTGCTCGACAACGTTCAGCGAAGGTGCGTTACGGAACAGCCACCCCGAGAAGACCTTGCGCCAGGCGAGCTTTTC CTGGGTCGTGGCGCGCTCTT
Product: leucyl/phenylalanyl-tRNA--protein transferase
Products: NA
Alternate protein names: L/F-transferase; Leucyltransferase; Phenyalanyltransferase
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSRIEPHAIPPELLLKAYRAGIFPMADSRDDPEVFWVEPKMRAILPLEGFHLSRSLARTLRRGKFTVTCNAAFEAVIDAC AAPRPGAEESWISARIRESYIGLHEHGHAHSIECWHNGRLVGGLYGVGFARVFCGESMFSREPDASKVALAWLVASLRKV GAELLDCQFTTPHLASLGAVEIPQSQYLQLLSKAQRPYSSGELAAARALADAVGDGLGIGGAGVVKGDAAALGLPAGFAA LRAEGAGSSSPGNVIAQSLTHTS
Sequences:
>Translated_263_residues MSRIEPHAIPPELLLKAYRAGIFPMADSRDDPEVFWVEPKMRAILPLEGFHLSRSLARTLRRGKFTVTCNAAFEAVIDAC AAPRPGAEESWISARIRESYIGLHEHGHAHSIECWHNGRLVGGLYGVGFARVFCGESMFSREPDASKVALAWLVASLRKV GAELLDCQFTTPHLASLGAVEIPQSQYLQLLSKAQRPYSSGELAAARALADAVGDGLGIGGAGVVKGDAAALGLPAGFAA LRAEGAGSSSPGNVIAQSLTHTS >Mature_262_residues SRIEPHAIPPELLLKAYRAGIFPMADSRDDPEVFWVEPKMRAILPLEGFHLSRSLARTLRRGKFTVTCNAAFEAVIDACA APRPGAEESWISARIRESYIGLHEHGHAHSIECWHNGRLVGGLYGVGFARVFCGESMFSREPDASKVALAWLVASLRKVG AELLDCQFTTPHLASLGAVEIPQSQYLQLLSKAQRPYSSGELAAARALADAVGDGLGIGGAGVVKGDAAALGLPAGFAAL RAEGAGSSSPGNVIAQSLTHTS
Specific function: Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
COG id: COG2360
COG function: function code O; Leu/Phe-tRNA-protein transferase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the L/F-transferase family
Homologues:
Organism=Escherichia coli, GI1787111, Length=187, Percent_Identity=47.0588235294118, Blast_Score=157, Evalue=5e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LFTR_NOVAD (Q2GA52)
Other databases:
- EMBL: CP000248 - RefSeq: YP_496105.1 - ProteinModelPortal: Q2GA52 - SMR: Q2GA52 - STRING: Q2GA52 - GeneID: 3915880 - GenomeReviews: CP000248_GR - KEGG: nar:Saro_0826 - NMPDR: fig|48935.1.peg.3458 - eggNOG: COG2360 - HOGENOM: HBG485363 - OMA: GEPILWW - PhylomeDB: Q2GA52 - ProtClustDB: PRK00301 - BioCyc: NARO279238:SARO_0826-MONOMER - GO: GO:0005737 - HAMAP: MF_00688 - InterPro: IPR016181 - InterPro: IPR004616 - TIGRFAMs: TIGR00667
Pfam domain/function: PF03588 Leu_Phe_trans; SSF55729 Acyl_CoA_acyltransferase
EC number: =2.3.2.6
Molecular weight: Translated: 27853; Mature: 27722
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIEPHAIPPELLLKAYRAGIFPMADSRDDPEVFWVEPKMRAILPLEGFHLSRSLARTL CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHH RRGKFTVTCNAAFEAVIDACAAPRPGAEESWISARIRESYIGLHEHGHAHSIECWHNGRL HCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCEEEEEECCEE VGGLYGVGFARVFCGESMFSREPDASKVALAWLVASLRKVGAELLDCQFTTPHLASLGAV EEHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCE EIPQSQYLQLLSKAQRPYSSGELAAARALADAVGDGLGIGGAGVVKGDAAALGLPAGFAA ECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHCCCHHHHH LRAEGAGSSSPGNVIAQSLTHTS HHCCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure SRIEPHAIPPELLLKAYRAGIFPMADSRDDPEVFWVEPKMRAILPLEGFHLSRSLARTL CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHH RRGKFTVTCNAAFEAVIDACAAPRPGAEESWISARIRESYIGLHEHGHAHSIECWHNGRL HCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCEEEEEECCEE VGGLYGVGFARVFCGESMFSREPDASKVALAWLVASLRKVGAELLDCQFTTPHLASLGAV EEHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCE EIPQSQYLQLLSKAQRPYSSGELAAARALADAVGDGLGIGGAGVVKGDAAALGLPAGFAA ECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHCCCHHHHH LRAEGAGSSSPGNVIAQSLTHTS HHCCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA