| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198734
Identifier: 87198734
GI number: 87198734
Start: 749871
End: 750902
Strand: Reverse
Name: 87198734
Synonym: Saro_0710
Alternate gene names: NA
Gene position: 750902-749871 (Counterclockwise)
Preceding gene: 87198735
Following gene: 87198733
Centisome position: 21.08
GC content: 62.5
Gene sequence:
>1032_bases ATGTCCAAGATCAAGCGGGGCGTCAGCCTCTATTCCTTCCAGGAGGAGCTGTTCCTCGGCCGCATGAACGTGGAGGACTG CGTGTCCTTCGCCGCATCCATCGGCGCGACAGGGATCGAGATCCTGCCCGAACAGAACATGCCGACATTCCCGAACCTGT CCGACGCGCAGGTGGAGGAATGGAAGGCCATGGTCGCCCGCCACGGCTGCCACTTCACCGCCTATGACATGTTCCTCGAC ACCAAGCTGCGCAAGGACCGGCTCATGTCGGACGACGAGCAGGTCGAAAGCATCGTTCGCGACCTCAGGCTCTGCAACCG GCTGGGCATCCGCAACATGCGCGTCCTGGTCTTCGTGCGTCCCGACATCCTTGGTCGCTGCGTGCCCTATGCCGAAGAGC TGGACGTCCACATGGGCGTCGAGGTTCACGCCCCGTGGCACCTCGAGCACGCATGGATCCTGCGCACGATCGAAGAAGCG GACCGCCTCGGCACGAAGCACCTCGGCATCCTGCCCGACATGGGCATCTTCATGAAGCACTACCCGCCCGCATTCCGCGC GCGCTTCGAGCGGCAGGGCGCCCGCCCCGAAGTTACGCAGTTCATCGTCGACCAGCACGAGGCCAAGATCATGGCCGAGT ACACGATCTACGAAGTCGCGGTGAAGATGGGGGGCAACAAGGCCGAGGTTGCCATGGCCGAAACCCTGCGCCACGCGCCC TACGCCAATCCGAAGCGGATCGCCGACTACGCGCCCTATTTCCACCACATCCAGGCCAAGTTCTACGAAATGGACGAGGA CTGCACAGACCCGTCGATCGCCTACGACGAAGTGATCGACGCTCTGGTCGGCTGCGGATGGGAAGGAACCCTGTCGAGCG AGTATGAAGGCAACCGCTGGATCCAGGACGTCCACGAGGTGGACAGCCGCGAACAGGTGCGTCGCCAGCACGTGATGTTC GAACGCCTGATCGTCCAATCCGAAGCAAGACACGCCGGGAAGGAAGCCGCCTTATGTTCGACAAGTACCTGA
Upstream 100 bases:
>100_bases ACGGCCTGACATTCCCACGTCCGTCCAAGCCGGCCAAGTCCGTCCGAACCGGCCAAGTCTGTCCAAACCGGCCAAGTCTG TCCAAACCGGAAAGTCTCCA
Downstream 100 bases:
>100_bases TCGACGCAGCCACCGTGCACAACACCGGCCCGGTAGACGCACCCACCGGTTTCTCGTTCCAGGCCAAGCTCGGCTATTAT CGCGGCCTCGGCCTATCGAT
Product: xylose isomerase-like TIM barrel domain-containing protein
Products: NA
Alternate protein names: Xylose Isomerase Domain-Containing Protein
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLD TKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEA DRLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMF ERLIVQSEARHAGKEAALCSTST
Sequences:
>Translated_343_residues MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLD TKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEA DRLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMF ERLIVQSEARHAGKEAALCSTST >Mature_342_residues SKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEEWKAMVARHGCHFTAYDMFLDT KLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVRPDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEAD RLGTKHLGILPDMGIFMKHYPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAPY ANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRWIQDVHEVDSREQVRRQHVMFE RLIVQSEARHAGKEAALCSTST
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39394; Mature: 39263
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEE CCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH WKAMVARHGCHFTAYDMFLDTKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVR HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC PDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEADRLGTKHLGILPDMGIFMKH CHHHHHHCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC YPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRW CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH IQDVHEVDSREQVRRQHVMFERLIVQSEARHAGKEAALCSTST HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SKIKRGVSLYSFQEELFLGRMNVEDCVSFAASIGATGIEILPEQNMPTFPNLSDAQVEE CHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH WKAMVARHGCHFTAYDMFLDTKLRKDRLMSDDEQVESIVRDLRLCNRLGIRNMRVLVFVR HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEC PDILGRCVPYAEELDVHMGVEVHAPWHLEHAWILRTIEEADRLGTKHLGILPDMGIFMKH CHHHHHHCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC YPPAFRARFERQGARPEVTQFIVDQHEAKIMAEYTIYEVAVKMGGNKAEVAMAETLRHAP CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC YANPKRIADYAPYFHHIQAKFYEMDEDCTDPSIAYDEVIDALVGCGWEGTLSSEYEGNRW CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH IQDVHEVDSREQVRRQHVMFERLIVQSEARHAGKEAALCSTST HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA