| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198703
Identifier: 87198703
GI number: 87198703
Start: 715567
End: 716622
Strand: Reverse
Name: 87198703
Synonym: Saro_0679
Alternate gene names: NA
Gene position: 716622-715567 (Counterclockwise)
Preceding gene: 87198704
Following gene: 87198702
Centisome position: 20.12
GC content: 68.47
Gene sequence:
>1056_bases GTGACCACTTCGCTGCTGGACACGTTCGTCCGGCTGATCGCCAATACCGGGCCGATCAGCATGGCGCACTACATGGCCGA ATCGAATGCACGGTACTACGCCGCCCAGGACCCGTTCGGGGTCGCCGGCGATTTCATCACCGCGCCCGAGATCAGCCAGA TGTTCGGCGAACTGATAGGCCTGTACCTGGCCGACATCTGGATCCGCGCCGGACGTCCGGAGCCGGTCCACTATGTCGAG CTTGGACCGGGCCGGGGCACGCTGGCACGCGATGCGCTGCGCGCTGCGCGACGCTACGGTCTCGTTCCGCGCACGCACTT CGTGGAAACCAGCACGGCGCTCAAGGCGCTCCAGCTAGACATGCATCCGGATGCGCGCTGGCACGCCGACCTTTCGACGC TTCCCGTCGACGGGCCGCTGCTGATAGTGGCCAACGAATTCCTCGATGCGCTGCCGGTCCGCCAGATGGTGAAGACCGCA GCCGGGTGGCGCGAGCGCATGGTCGGGCTCGACGACGGGCGCCTCGTGCCGGTCTCGGGCAGTGCGCCGATGGATGCGGC CGTTCCTGCGGGTCGGCAGGAAGCGCCCGAAGGCGCGATCCTCGAGACTTCGCCGGCCTGCGCCGCCGTAATCTACGAAG TGGCCGGACGGCTGGCCGCGCAAGGAGGCACGGCGCTGTTCATCGACTATGGACATGCCGAGCCGCGCCTTGGCTCCTCG CTCCAGGCGGTCCGAGCGCACCGCAAGGTCGATGTCTTTGCCGCCCCCGGCGAGGCCGATCTGACGGCACATGTCGACTT TTCGGCGCTGGCACCCATCGCGCAATCGCGCGAAGTGCGCTGGCTGGGCACGGTCGAGCAGGGCGACTGGTTGCGGGCGC TGGGGATCGAGGCCCGCGCGGAAGCGCTGGCGACGTTCTCACCGCCTCATGCGCAGGCGATCCACGCCGCACGCGACCGG CTGATCGACGAGGGCCAGATGGGCTCGCTGTTCAAGGTCATGGGACTCGCCGGGCCCACCTGGCCCGACGGCTCGGGATT CCAGCGAATCTCCTGA
Upstream 100 bases:
>100_bases TGGGCCAGTGGCTGACCATACCGATGATGGCCATCGGCCTAGGCTTCCTGCTCAACGCGGTCGTGCGCAAGCCGCTGTCG ACGACGGGAGCCGCGCCCGC
Downstream 100 bases:
>100_bases TCGGCCGCGTAACCCCGAGTCTTCCTTGCGAAGCCGCAGGATTCCGTGCCTTTTCCCATACCAAAATGCCTGTTGGCAAA GCCGCCGCTTTGCGTCTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MTTSLLDTFVRLIANTGPISMAHYMAESNARYYAAQDPFGVAGDFITAPEISQMFGELIGLYLADIWIRAGRPEPVHYVE LGPGRGTLARDALRAARRYGLVPRTHFVETSTALKALQLDMHPDARWHADLSTLPVDGPLLIVANEFLDALPVRQMVKTA AGWRERMVGLDDGRLVPVSGSAPMDAAVPAGRQEAPEGAILETSPACAAVIYEVAGRLAAQGGTALFIDYGHAEPRLGSS LQAVRAHRKVDVFAAPGEADLTAHVDFSALAPIAQSREVRWLGTVEQGDWLRALGIEARAEALATFSPPHAQAIHAARDR LIDEGQMGSLFKVMGLAGPTWPDGSGFQRIS
Sequences:
>Translated_351_residues MTTSLLDTFVRLIANTGPISMAHYMAESNARYYAAQDPFGVAGDFITAPEISQMFGELIGLYLADIWIRAGRPEPVHYVE LGPGRGTLARDALRAARRYGLVPRTHFVETSTALKALQLDMHPDARWHADLSTLPVDGPLLIVANEFLDALPVRQMVKTA AGWRERMVGLDDGRLVPVSGSAPMDAAVPAGRQEAPEGAILETSPACAAVIYEVAGRLAAQGGTALFIDYGHAEPRLGSS LQAVRAHRKVDVFAAPGEADLTAHVDFSALAPIAQSREVRWLGTVEQGDWLRALGIEARAEALATFSPPHAQAIHAARDR LIDEGQMGSLFKVMGLAGPTWPDGSGFQRIS >Mature_350_residues TTSLLDTFVRLIANTGPISMAHYMAESNARYYAAQDPFGVAGDFITAPEISQMFGELIGLYLADIWIRAGRPEPVHYVEL GPGRGTLARDALRAARRYGLVPRTHFVETSTALKALQLDMHPDARWHADLSTLPVDGPLLIVANEFLDALPVRQMVKTAA GWRERMVGLDDGRLVPVSGSAPMDAAVPAGRQEAPEGAILETSPACAAVIYEVAGRLAAQGGTALFIDYGHAEPRLGSSL QAVRAHRKVDVFAAPGEADLTAHVDFSALAPIAQSREVRWLGTVEQGDWLRALGIEARAEALATFSPPHAQAIHAARDRL IDEGQMGSLFKVMGLAGPTWPDGSGFQRIS
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=388, Percent_Identity=34.2783505154639, Blast_Score=185, Evalue=5e-47, Organism=Homo sapiens, GI145701028, Length=355, Percent_Identity=28.169014084507, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI193211224, Length=375, Percent_Identity=31.7333333333333, Blast_Score=171, Evalue=5e-43, Organism=Drosophila melanogaster, GI24645885, Length=364, Percent_Identity=35.7142857142857, Blast_Score=178, Evalue=5e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37692; Mature: 37561
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSLLDTFVRLIANTGPISMAHYMAESNARYYAAQDPFGVAGDFITAPEISQMFGELIG CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH LYLADIWIRAGRPEPVHYVELGPGRGTLARDALRAARRYGLVPRTHFVETSTALKALQLD HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEC MHPDARWHADLSTLPVDGPLLIVANEFLDALPVRQMVKTAAGWRERMVGLDDGRLVPVSG CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC SAPMDAAVPAGRQEAPEGAILETSPACAAVIYEVAGRLAAQGGTALFIDYGHAEPRLGSS CCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH LQAVRAHRKVDVFAAPGEADLTAHVDFSALAPIAQSREVRWLGTVEQGDWLRALGIEARA HHHHHHHCCEEEEECCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHCCHHHH EALATFSPPHAQAIHAARDRLIDEGQMGSLFKVMGLAGPTWPDGSGFQRIS HHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TTSLLDTFVRLIANTGPISMAHYMAESNARYYAAQDPFGVAGDFITAPEISQMFGELIG CHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH LYLADIWIRAGRPEPVHYVELGPGRGTLARDALRAARRYGLVPRTHFVETSTALKALQLD HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEC MHPDARWHADLSTLPVDGPLLIVANEFLDALPVRQMVKTAAGWRERMVGLDDGRLVPVSG CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC SAPMDAAVPAGRQEAPEGAILETSPACAAVIYEVAGRLAAQGGTALFIDYGHAEPRLGSS CCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH LQAVRAHRKVDVFAAPGEADLTAHVDFSALAPIAQSREVRWLGTVEQGDWLRALGIEARA HHHHHHHCCEEEEECCCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHCCHHHH EALATFSPPHAQAIHAARDRLIDEGQMGSLFKVMGLAGPTWPDGSGFQRIS HHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA