| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198628
Identifier: 87198628
GI number: 87198628
Start: 648439
End: 649371
Strand: Reverse
Name: 87198628
Synonym: Saro_0604
Alternate gene names: NA
Gene position: 649371-648439 (Counterclockwise)
Preceding gene: 87198629
Following gene: 87198621
Centisome position: 18.23
GC content: 69.35
Gene sequence:
>933_bases ATGCGCAAGCTTTCCATCCCGCTCGCGGTGATCGGCGCAGCCCTCGCGTCGACCCCGCTCCTCGCCGCCCCCGCAAAGGA GCAGGTCATCGAAGTCCCCGGCTTTGCCGATTTCCTGGCGGTTGATGGCGATACGGTCTGGGCGACAAACGCCGGCCGGG TAGAGCGCTGGTCCCGCAAGGGGCGGCTGGCCGAAGTGCCGATGGGCAAGCCCTGCGGCGCCATGGCGGTCCACGGCGGC TCGCTATGGGTGGCAGACTGCAAGGAAAACGCGCTCGTCCGCATCGACACGCGCACCGCGCGCAAGATCGCGACGATCCC GACCGGCATCGCCAACCGCGACGGCGAACTCAACGTCGTGGCCGGCGCCGGCTCGATCTGGATCGCAAGCGACAACGATG ACGGCGCGGTTTCGCGCGTGGACCCGGCGACCAACGCCGTCGTCGCCACCATCCCGGTCGATCCCGGCACCTGGTACCTT TCCTTCGGGCACGGCGCGCTTTGGGCCGTCAGCGCCAAGGGCCAGTCGCTGCAACGGATCGACCCCGCCGCCAACGCGGT GACGAAGCGCACGGCCCTCGGCAAGCAACCCGGCTTCCTCGTCGCGGGCGAAGCGGCGGTCTGGGTACAGGAACAGGGCG ATGGCACCGTCGCCCGCGTCGATCCGCAAACGGGCGAGGTGACTGGCCGCGCCAAGGTCGGGCCGGTGCTCAAGTGGGGC GATATCGATACGGGCGGCGGACTGGTGTGGTTGCGGACCACCGAAGACCAGACGCTGGTCGTCATCGACCCGAAGACGCT GGCCATCCGCGCCCGCATCGGCAAGGCCGAAGGCAGCGGCGCCTTGCGCTACACGAAGAAGGGCTTGTGGACTTCCGCCC ACGATGTGCACACGCTGACCTGGTGGCCCGGGCGGATGCTGCCCCGGCGATAA
Upstream 100 bases:
>100_bases GCGTCAAGGGCTTCGTCGCGGAACCCCGCGCCCTCGTCGGCGCGCGGGACATCACCCACCTTGGCGGCTGGCGCGCCTTC GTTGCGGCGGGAGCATGAAG
Downstream 100 bases:
>100_bases GCCCGCACGCAGCCCGATCGGCGGCCAACCGGCCACCGATCGATCAGCCGCGGCTCAGCGAAGCGAAGCCAGCTTGACGT TCGCGGTTCCGCCGGTTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MRKLSIPLAVIGAALASTPLLAAPAKEQVIEVPGFADFLAVDGDTVWATNAGRVERWSRKGRLAEVPMGKPCGAMAVHGG SLWVADCKENALVRIDTRTARKIATIPTGIANRDGELNVVAGAGSIWIASDNDDGAVSRVDPATNAVVATIPVDPGTWYL SFGHGALWAVSAKGQSLQRIDPAANAVTKRTALGKQPGFLVAGEAAVWVQEQGDGTVARVDPQTGEVTGRAKVGPVLKWG DIDTGGGLVWLRTTEDQTLVVIDPKTLAIRARIGKAEGSGALRYTKKGLWTSAHDVHTLTWWPGRMLPRR
Sequences:
>Translated_310_residues MRKLSIPLAVIGAALASTPLLAAPAKEQVIEVPGFADFLAVDGDTVWATNAGRVERWSRKGRLAEVPMGKPCGAMAVHGG SLWVADCKENALVRIDTRTARKIATIPTGIANRDGELNVVAGAGSIWIASDNDDGAVSRVDPATNAVVATIPVDPGTWYL SFGHGALWAVSAKGQSLQRIDPAANAVTKRTALGKQPGFLVAGEAAVWVQEQGDGTVARVDPQTGEVTGRAKVGPVLKWG DIDTGGGLVWLRTTEDQTLVVIDPKTLAIRARIGKAEGSGALRYTKKGLWTSAHDVHTLTWWPGRMLPRR >Mature_310_residues MRKLSIPLAVIGAALASTPLLAAPAKEQVIEVPGFADFLAVDGDTVWATNAGRVERWSRKGRLAEVPMGKPCGAMAVHGG SLWVADCKENALVRIDTRTARKIATIPTGIANRDGELNVVAGAGSIWIASDNDDGAVSRVDPATNAVVATIPVDPGTWYL SFGHGALWAVSAKGQSLQRIDPAANAVTKRTALGKQPGFLVAGEAAVWVQEQGDGTVARVDPQTGEVTGRAKVGPVLKWG DIDTGGGLVWLRTTEDQTLVVIDPKTLAIRARIGKAEGSGALRYTKKGLWTSAHDVHTLTWWPGRMLPRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32743; Mature: 32743
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLSIPLAVIGAALASTPLLAAPAKEQVIEVPGFADFLAVDGDTVWATNAGRVERWSRK CCEECCCHHHHHHHHHCCCEEECCCHHHEEECCCCEEEEEECCCEEEEECCCCHHHHHHC GRLAEVPMGKPCGAMAVHGGSLWVADCKENALVRIDTRTARKIATIPTGIANRDGELNVV CCEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEE AGAGSIWIASDNDDGAVSRVDPATNAVVATIPVDPGTWYLSFGHGALWAVSAKGQSLQRI EECCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCHHHC DPAANAVTKRTALGKQPGFLVAGEAAVWVQEQGDGTVARVDPQTGEVTGRAKVGPVLKWG CCHHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCEEEECCCCCCEECCEECCCEEEEC DIDTGGGLVWLRTTEDQTLVVIDPKTLAIRARIGKAEGSGALRYTKKGLWTSAHDVHTLT CCCCCCCEEEEEECCCCEEEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEE WWPGRMLPRR ECCCCCCCCC >Mature Secondary Structure MRKLSIPLAVIGAALASTPLLAAPAKEQVIEVPGFADFLAVDGDTVWATNAGRVERWSRK CCEECCCHHHHHHHHHCCCEEECCCHHHEEECCCCEEEEEECCCEEEEECCCCHHHHHHC GRLAEVPMGKPCGAMAVHGGSLWVADCKENALVRIDTRTARKIATIPTGIANRDGELNVV CCEEECCCCCCCCEEEEECCCEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEE AGAGSIWIASDNDDGAVSRVDPATNAVVATIPVDPGTWYLSFGHGALWAVSAKGQSLQRI EECCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCHHHC DPAANAVTKRTALGKQPGFLVAGEAAVWVQEQGDGTVARVDPQTGEVTGRAKVGPVLKWG CCHHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCEEEECCCCCCEECCEECCCEEEEC DIDTGGGLVWLRTTEDQTLVVIDPKTLAIRARIGKAEGSGALRYTKKGLWTSAHDVHTLT CCCCCCCEEEEEECCCCEEEEECCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEE WWPGRMLPRR ECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA