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The map label for this gene is ypdB [C]

Identifier: 87198216

GI number: 87198216

Start: 195378

End: 196112

Strand: Direct

Name: ypdB [C]

Synonym: Saro_0190

Alternate gene names: 87198216

Gene position: 195378-196112 (Clockwise)

Preceding gene: 87198215

Following gene: 87198220

Centisome position: 5.49

GC content: 68.03

Gene sequence:

>735_bases
TTGCGCACGTTGATAGTCGACGACGAACCGCTGGCGGTGGAGCGCATGCAGATCCTCTGCGCGCGCATCCCCGCGCTCCA
GGTGGTGGGGACCGCAAGCGACGGCGCCGCCGCGCTTCGCCTGATCGAGGCGCTCGCGCCCGACCTCGTTCTGCTCGACA
TGACCATGCCCGAAGTGGACGGCCTTGGCGTTGCCCGGGCTCTGGCCGGACAGGCCAGCCGCCCTGCCGTGGTCTTCGTC
ACCGCGCACGACGATTTCGCCGTCGAGGCCTTCGACTGCGATGCGGTCGATTACGTGCTGAAGCCGGTTGCGCAGGAGCG
GCTGGAGCGCGCGGTGGAACGTGCGCAGGCCCGTCGCAGCGCGGCCCCTGAAACGCCGTTGACGCCGGAACGGGCCGCGA
GCGAATGGATCGAGGAATTCTGGGTTCCTCACCGCTCCGAACTTATCCGCGTGGCGGCTTCCGATCTCGAACGCATCGAC
GCCGAACGCGACTATGTGCGCCTGCACGTCGGGCAGAGGTCGTACCTGATGCTTCACACCATCGCGGGCCTCGAAGCACG
GCTCGACCCGGATCGCTTCATCCGGCTTCACCGCTCCACCATCGTCCGCCGCGACCGAATCGCCGGCCTGAAACACGATG
GTCTCGGCGTCTGGTCGGCGGAACTCGCGGATGGCACGATGCAACGCATCGGCCGCACCTATCTCGCGCGGGTCAAGGCG
ATGGCCGGGCGCTAG

Upstream 100 bases:

>100_bases
GAGGACGCGGCCAAGGTGGAAAGCGGGCCGCTGCCGGCGGGCGGCTATGCGACCGTGCTGACGCTGCCGATTGTCCGCAA
CGAATGCTGAGGGGGAAGAA

Downstream 100 bases:

>100_bases
GCCCCGCCCTGTCAGCCTTGGGTCCTCAGCCCTGGTTCCTCAGCCCTGGCTCCTCAGGCCTTGTACAGTCCGTCGATCCT
TGCGCCGTAGCGTTCGCGGA

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRTLIVDDEPLAVERMQILCARIPALQVVGTASDGAAALRLIEALAPDLVLLDMTMPEVDGLGVARALAGQASRPAVVFV
TAHDDFAVEAFDCDAVDYVLKPVAQERLERAVERAQARRSAAPETPLTPERAASEWIEEFWVPHRSELIRVAASDLERID
AERDYVRLHVGQRSYLMLHTIAGLEARLDPDRFIRLHRSTIVRRDRIAGLKHDGLGVWSAELADGTMQRIGRTYLARVKA
MAGR

Sequences:

>Translated_244_residues
MRTLIVDDEPLAVERMQILCARIPALQVVGTASDGAAALRLIEALAPDLVLLDMTMPEVDGLGVARALAGQASRPAVVFV
TAHDDFAVEAFDCDAVDYVLKPVAQERLERAVERAQARRSAAPETPLTPERAASEWIEEFWVPHRSELIRVAASDLERID
AERDYVRLHVGQRSYLMLHTIAGLEARLDPDRFIRLHRSTIVRRDRIAGLKHDGLGVWSAELADGTMQRIGRTYLARVKA
MAGR
>Mature_244_residues
MRTLIVDDEPLAVERMQILCARIPALQVVGTASDGAAALRLIEALAPDLVLLDMTMPEVDGLGVARALAGQASRPAVVFV
TAHDDFAVEAFDCDAVDYVLKPVAQERLERAVERAQARRSAAPETPLTPERAASEWIEEFWVPHRSELIRVAASDLERID
AERDYVRLHVGQRSYLMLHTIAGLEARLDPDRFIRLHRSTIVRRDRIAGLKHDGLGVWSAELADGTMQRIGRTYLARVKA
MAGR

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=212, Percent_Identity=28.3018867924528, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082052, Length=245, Percent_Identity=28.9795918367347, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788550, Length=139, Percent_Identity=36.6906474820144, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786838, Length=119, Percent_Identity=36.1344537815126, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27063; Mature: 27063

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLIVDDEPLAVERMQILCARIPALQVVGTASDGAAALRLIEALAPDLVLLDMTMPEVD
CCEEEECCCCHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCC
GLGVARALAGQASRPAVVFVTAHDDFAVEAFDCDAVDYVLKPVAQERLERAVERAQARRS
CCHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPETPLTPERAASEWIEEFWVPHRSELIRVAASDLERIDAERDYVRLHVGQRSYLMLHT
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHH
IAGLEARLDPDRFIRLHRSTIVRRDRIAGLKHDGLGVWSAELADGTMQRIGRTYLARVKA
HHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
MAGR
HCCC
>Mature Secondary Structure
MRTLIVDDEPLAVERMQILCARIPALQVVGTASDGAAALRLIEALAPDLVLLDMTMPEVD
CCEEEECCCCHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCC
GLGVARALAGQASRPAVVFVTAHDDFAVEAFDCDAVDYVLKPVAQERLERAVERAQARRS
CCHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AAPETPLTPERAASEWIEEFWVPHRSELIRVAASDLERIDAERDYVRLHVGQRSYLMLHT
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHH
IAGLEARLDPDRFIRLHRSTIVRRDRIAGLKHDGLGVWSAELADGTMQRIGRTYLARVKA
HHCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
MAGR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA