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The map label for this gene is erfK [H]

Identifier: 86751770

GI number: 86751770

Start: 5285363

End: 5285968

Strand: Direct

Name: erfK [H]

Synonym: RPB_4672

Alternate gene names: 86751770

Gene position: 5285363-5285968 (Clockwise)

Preceding gene: 86751769

Following gene: 86751771

Centisome position: 99.13

GC content: 67.49

Gene sequence:

>606_bases
ATGATCGGAATGTCACGTCTGCTGGGCCGGCTCGCCATGGCGATGTCCATGGCCATGTCCTTGCTGCTGCTCGCCGCGCC
GGGCCATGCGCAGCAACCCGACGTCGGCGACGAGCCCGGGCTGATCGCCAATGACGACTACGAGCTGCCGCCGGAATTGC
GCAAGCAGATGGTGTTCTTCCGCACCAGCGAGCCGGCGGGCACGATCGTGGTGCAGACCGCCGAGCGCTATCTCTACCTG
GTCCAGGGCAACAATCGAGCGCTGCGGTACGGAATCGGCGTGGGCCGCGAAGGCTTCCAGTGGCAGGGCCTGCTGAAGAT
CTCGCGCAAGGCGGAATGGCCGGATTGGGTGCCGCCGCCTGAAATGATCCAGCGCCAGCCTTATCTGCCGCGCTTCATGG
CCGGCGGGCCGGGCAATCCGCTCGGCGCCCGCGCGATGTATCTCGGCTCGACCATCTATCGCATCCACGGCACCAACCGC
CCCGACACGATCGGCACCGCGATCTCGTCGGGCTGCTTCCGCCTGGTCAACGCCGACGTCGCCGACCTCTACGAACGCGT
CCCGGTCGGCACCAAGGTCGTGGTGCGGCAGCGCCCCGAGCTGTGA

Upstream 100 bases:

>100_bases
CGTCGGTGCGGTAGTGCTGGTGTCGATGATCCTGCGGTTGTGGATCGCGCCGGGCTGACATGATAAATAGCCCGGCGCGA
CAGCGTCGGGAGGGGTATCG

Downstream 100 bases:

>100_bases
CGGCCCCGCCCGCTCCGTTTCTCATTGTCATCTGAATCAGAAAGACGTTCTCGATGTCATTCCGCAAGGGCCTGCTGATC
GGCCTCGGCGTCGCCGCCGT

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MIGMSRLLGRLAMAMSMAMSLLLLAAPGHAQQPDVGDEPGLIANDDYELPPELRKQMVFFRTSEPAGTIVVQTAERYLYL
VQGNNRALRYGIGVGREGFQWQGLLKISRKAEWPDWVPPPEMIQRQPYLPRFMAGGPGNPLGARAMYLGSTIYRIHGTNR
PDTIGTAISSGCFRLVNADVADLYERVPVGTKVVVRQRPEL

Sequences:

>Translated_201_residues
MIGMSRLLGRLAMAMSMAMSLLLLAAPGHAQQPDVGDEPGLIANDDYELPPELRKQMVFFRTSEPAGTIVVQTAERYLYL
VQGNNRALRYGIGVGREGFQWQGLLKISRKAEWPDWVPPPEMIQRQPYLPRFMAGGPGNPLGARAMYLGSTIYRIHGTNR
PDTIGTAISSGCFRLVNADVADLYERVPVGTKVVVRQRPEL
>Mature_201_residues
MIGMSRLLGRLAMAMSMAMSLLLLAAPGHAQQPDVGDEPGLIANDDYELPPELRKQMVFFRTSEPAGTIVVQTAERYLYL
VQGNNRALRYGIGVGREGFQWQGLLKISRKAEWPDWVPPPEMIQRQPYLPRFMAGGPGNPLGARAMYLGSTIYRIHGTNR
PDTIGTAISSGCFRLVNADVADLYERVPVGTKVVVRQRPEL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=140, Percent_Identity=40, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787040, Length=141, Percent_Identity=39.0070921985816, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=36.6906474820144, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787356, Length=141, Percent_Identity=34.0425531914894, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22268; Mature: 22268

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGMSRLLGRLAMAMSMAMSLLLLAAPGHAQQPDVGDEPGLIANDDYELPPELRKQMVFF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHCEEEE
RTSEPAGTIVVQTAERYLYLVQGNNRALRYGIGVGREGFQWQGLLKISRKAEWPDWVPPP
ECCCCCCEEEEEECCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCH
EMIQRQPYLPRFMAGGPGNPLGARAMYLGSTIYRIHGTNRPDTIGTAISSGCFRLVNADV
HHHCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCH
ADLYERVPVGTKVVVRQRPEL
HHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure
MIGMSRLLGRLAMAMSMAMSLLLLAAPGHAQQPDVGDEPGLIANDDYELPPELRKQMVFF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHCEEEE
RTSEPAGTIVVQTAERYLYLVQGNNRALRYGIGVGREGFQWQGLLKISRKAEWPDWVPPP
ECCCCCCEEEEEECCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCH
EMIQRQPYLPRFMAGGPGNPLGARAMYLGSTIYRIHGTNRPDTIGTAISSGCFRLVNADV
HHHCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCH
ADLYERVPVGTKVVVRQRPEL
HHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]