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The map label for this gene is 86751536

Identifier: 86751536

GI number: 86751536

Start: 5026759

End: 5027163

Strand: Reverse

Name: 86751536

Synonym: RPB_4437

Alternate gene names: NA

Gene position: 5027163-5026759 (Counterclockwise)

Preceding gene: 86751537

Following gene: 86751533

Centisome position: 94.29

GC content: 63.46

Gene sequence:

>405_bases
ATGATCTGCCTCGATACGAATGTTGTCATCGGCATCATCAATGGCCGTGCCCCCCAACTAGAAGCGCGATTTCGGGAAAC
CATCGGCGTTGTGCCCGTCGCCTTGCCGGTGATCGCGCTGTTCGAATTGCGCTATGGCTACGCCAAGAGTCATCGGCGGG
TACAGATGGAGGCCTTGCTGGGTGAGTTTCTCGCGCCCGGAGTCACCATTCTGCCGTTCGGCGAGGAGGATGCAGCCGAG
GCGGGCGACATCCGGGCCAATCTCGAGGTGCAAGGCGTGCCGATCGGTTTCTATGATGTGCTCATCGCCGCGCAGGCGCG
CGCCCGCGGCGCGATCCTGGTCACCGCCAACCGGCGGGAGTTCGAACGCGTGCCCGGGCTTATGGTGACCGATTGGGCGG
CGTGA

Upstream 100 bases:

>100_bases
GGCGCGCGCGGCTGGATGCACTCGGCGCGCGAGATTTCCTCGCCGATGGCATGCCGGACGATCCGTCGGTCCAGCCCGAA
GATTTCGGGATCGATTGAGT

Downstream 100 bases:

>100_bases
CGGGTTGAGCGTGCGCTGATCGCGCACGCGGGCCCGACCTGTTGGATGAGTTGAACTGGTGGTGGCGTAATGGATTGTCG
CGTTGCGTTGGCGGAAGAAA

Product: PilT protein-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MICLDTNVVIGIINGRAPQLEARFRETIGVVPVALPVIALFELRYGYAKSHRRVQMEALLGEFLAPGVTILPFGEEDAAE
AGDIRANLEVQGVPIGFYDVLIAAQARARGAILVTANRREFERVPGLMVTDWAA

Sequences:

>Translated_134_residues
MICLDTNVVIGIINGRAPQLEARFRETIGVVPVALPVIALFELRYGYAKSHRRVQMEALLGEFLAPGVTILPFGEEDAAE
AGDIRANLEVQGVPIGFYDVLIAAQARARGAILVTANRREFERVPGLMVTDWAA
>Mature_134_residues
MICLDTNVVIGIINGRAPQLEARFRETIGVVPVALPVIALFELRYGYAKSHRRVQMEALLGEFLAPGVTILPFGEEDAAE
AGDIRANLEVQGVPIGFYDVLIAAQARARGAILVTANRREFERVPGLMVTDWAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14589; Mature: 14589

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICLDTNVVIGIINGRAPQLEARFRETIGVVPVALPVIALFELRYGYAKSHRRVQMEALL
CEEECCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCCEEHHHHHH
GEFLAPGVTILPFGEEDAAEAGDIRANLEVQGVPIGFYDVLIAAQARARGAILVTANRRE
HHHHCCCEEEEECCCCCCCCCCCEEECEEEEECCCHHHHHHHHHHCCCCEEEEEEECCHH
FERVPGLMVTDWAA
HHHCCCEEEECCCC
>Mature Secondary Structure
MICLDTNVVIGIINGRAPQLEARFRETIGVVPVALPVIALFELRYGYAKSHRRVQMEALL
CEEECCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCCEEHHHHHH
GEFLAPGVTILPFGEEDAAEAGDIRANLEVQGVPIGFYDVLIAAQARARGAILVTANRRE
HHHHCCCEEEEECCCCCCCCCCCEEECEEEEECCCHHHHHHHHHHCCCCEEEEEEECCHH
FERVPGLMVTDWAA
HHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]