| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is fbiC [H]
Identifier: 86751524
GI number: 86751524
Start: 5010288
End: 5012750
Strand: Reverse
Name: fbiC [H]
Synonym: RPB_4423
Alternate gene names: 86751524
Gene position: 5012750-5010288 (Counterclockwise)
Preceding gene: 86751533
Following gene: 86751523
Centisome position: 94.02
GC content: 67.84
Gene sequence:
>2463_bases ATGATCGCGTCCCGATCGGACGACGATGTTCGAACCCAAGACGAACGCCGTGGTCGGCGGCACAATGAGATGAAGGTCGA CGACATGGTGTGGGACACGCGGGACGCCGAAGCTCTGTTGCGGGCGTACCAGGCGATGCCGATGGCGGAACTGCTCGACG AGGCCGCGACGCTCGCCCGCGACGGTCACCGCCATGTGATCAGCTACTCGCGCAAGGTGTTCGTGCCGCTGACCCGTCTG TGCCGCGACAGCTGCGGCTACTGCACCTTCGCCAAAACGCCGCGCCAGGTCGAGGCGGCCTTCCTGTCGCCGGACGATGT GCTGGCGATCGTCCGGGCCGGGCAGGCGGCTGGCTGTCACGAGGCGCTGCTGACGCTCGGCGACAAGCCCGAGGCACGCT ACGCCGCCGCGCGAGAATTTCTTGCGGCGCAGGGCGTCGCGACGACGGTCGACTACGTCGAGAAGATCTGCAAGCTGATC CTGGCCGAGACCGGCCTGCTGCCGCACGTCAATGCCGGCGTGATGAGTGAAGCGGAGACCGCGCGGCTGCGCAAGGTGAG CGTGTCGCAGGGCATCATGCTGGAGAGCGTGTCCGAGCGGCTGTGCGCGCGCGGCGAGGCGCATTTCGGCTCGCCCGACA AATTGCCGGCGGTGCGGCTGGACGCGATCGCGGCCGCGGGCAGGCTGCGGGTGCCGTTCACCAGCGGAATTCTGATCGGC ATCGGTGAGACCCGCCTCGAGCGGGTGCAATCGCTGCTGGCGCTGCGCTCGCTGCATCGGCGCTACGGGCATCTGCAGGA AATCATCGTGCAGAATTTCCGCGCCAAGGCCGATACGCGGTTCGCGGACCGGCACGAGCCCGGACTTGAAGACCTGCTGT GGACCGCCGCGGTGGCGCGCCTGATCTTCGGGCCGAAGATGAACATCCAGGTGCCACCGAACCTCAGCTACGCGGATTAT CCGCGGCTGCTGGAAGCCGGCATCAACGACTGGGGTGGGATTTCGCCGGTCACCGCCGATCACGTCAATCCGGAAGCGCC GTGGCCGGAGATCGCGCGGCTGCAGCAGGCGACCGAAGCGGTCGGGCTGACGCTGCAGCCCCGGCTCGCGGTGTATCCCG CCTATGTTCGCCACGCCGCGGACTGGATCGATCCGGCGCTGCTGCCGAAGGTCCTGAAAGCGGTCGACGCCGACGGCTTC CCGCGCGACGATGGTTGGATGCCGGGCGGTCTGGCGCCGATCCCGCCGACCGGCGCCGCGCGCCGCAGCGACCCTTCGCT GGAGGCACTCGTCGTCCGCGCGGCGGGCGGGACGCGGCTGTCGCAGCCCGAGGTGCAGGCGCTGTTCGGCGCGCGCGGCG GCGACGTCGACATGATCTGCGAGGCGGCCGACGCGGTGCGAGCGGCGTCGAGCGGCGAGACCGTGCGCTACGTCGTCAAC CGCAACATCAACTACACCAATGTCTGCAGCTACGCCTGCAAGTTCTGCGCGTTCTCCAAGGGCAAGACCCACGACCATCT GCGCGGGAGGCCCTACGACCTGTCGCTCGAGGAGGTTGCGCGTCGCGCCCGCGAAGCGTGGGATCGCGGCGCGACCGAAG TCTGCATGCAGGGTGGCATCAACCCGCACTACACCGGCAAGACCTATGTGGATCTGTTGCGCGCGGTGAAGAACGAAGTG CCGCAGATGCACGTCCACGCGTTCTCGCCTTTGGAAGTGAGCCAAGGTGCGGCCACCCTGGGCATGTCGGTGTCGAACTT CCTGTCGATGCTGCGCGACGAAGGCCTCGGCTCGCTGCCCGGCACCGCTGCCGAAATCCTCGACGACAAGGTGCGGCAGG TCATCTGCGCCGACAAGCTCGACACGCAGATCTGGCTGGACATCGTGCGCAGTGCGCATCGGGTCGGTCTGCGCACCACG GCGACGATCATGTTCGGCCACGTCGAAGGATCCGACAGCTGGGCCGCGCATCTGTTGCGAATTCGCGATCTGCAGGAGCA GACCGGCGGCTTCACCGAATTCGTGCCGCTGCCGTTCATCCATATGGAAGCGCCGATGTCGCTGCGCGGCCAGGCGCGCA GCGGCCCGACCTGGCGCGAGGTGCGGCTGATGCATGCGGTGGCGCGGCTGGTCTTGTATCCGCTGATCACCAATATTCAG GCCTCCTGGGTGAAGCTCGGCGAGGACGGCGTCGCGAGTCTTCTGCGGTCCGGCGTCAACGATCTCGGCGGCACGCTGAT GAACGAGAGTATCTCGCGCGCCGCCGGTACCCAGCATGGGCAGGAATTGGCGCCCGAAGCGATGGAAGCCCTGATCACGC GAGCCGGCCGGGTCGCCGAGCAGCGGACGACGCTGTATCGCCCGGTCGATGCCGAGCGCCGCGACGCCAGCTTCGCCGCG CCGGAGCTGCAGGATCTGGTGATGACACCGTTCGTGCCGAAGCAGATGGCGCTGGCACGATGA
Upstream 100 bases:
>100_bases CCCGGCTGGTCGGGCTGCGCGGATTGACTTGCGAGGCCGGGACTGTCAGATTTATCGAAACATCGTACCGATAAGCGGTA CGCCACCGCGGGTCCGCCCG
Downstream 100 bases:
>100_bases CCCACGTTCTGATCCCCTGCAAACCGCTCGCGTTCGGCAAGTCGCGCCTGGCGAGCGCGCTCGATCCGATCGGCCGGCGC TGGCTGTGCGAGCGCATGCT
Product: FO synthase
Products: NA
Alternate protein names: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [H]
Number of amino acids: Translated: 820; Mature: 820
Protein sequence:
>820_residues MIASRSDDDVRTQDERRGRRHNEMKVDDMVWDTRDAEALLRAYQAMPMAELLDEAATLARDGHRHVISYSRKVFVPLTRL CRDSCGYCTFAKTPRQVEAAFLSPDDVLAIVRAGQAAGCHEALLTLGDKPEARYAAAREFLAAQGVATTVDYVEKICKLI LAETGLLPHVNAGVMSEAETARLRKVSVSQGIMLESVSERLCARGEAHFGSPDKLPAVRLDAIAAAGRLRVPFTSGILIG IGETRLERVQSLLALRSLHRRYGHLQEIIVQNFRAKADTRFADRHEPGLEDLLWTAAVARLIFGPKMNIQVPPNLSYADY PRLLEAGINDWGGISPVTADHVNPEAPWPEIARLQQATEAVGLTLQPRLAVYPAYVRHAADWIDPALLPKVLKAVDADGF PRDDGWMPGGLAPIPPTGAARRSDPSLEALVVRAAGGTRLSQPEVQALFGARGGDVDMICEAADAVRAASSGETVRYVVN RNINYTNVCSYACKFCAFSKGKTHDHLRGRPYDLSLEEVARRAREAWDRGATEVCMQGGINPHYTGKTYVDLLRAVKNEV PQMHVHAFSPLEVSQGAATLGMSVSNFLSMLRDEGLGSLPGTAAEILDDKVRQVICADKLDTQIWLDIVRSAHRVGLRTT ATIMFGHVEGSDSWAAHLLRIRDLQEQTGGFTEFVPLPFIHMEAPMSLRGQARSGPTWREVRLMHAVARLVLYPLITNIQ ASWVKLGEDGVASLLRSGVNDLGGTLMNESISRAAGTQHGQELAPEAMEALITRAGRVAEQRTTLYRPVDAERRDASFAA PELQDLVMTPFVPKQMALAR
Sequences:
>Translated_820_residues MIASRSDDDVRTQDERRGRRHNEMKVDDMVWDTRDAEALLRAYQAMPMAELLDEAATLARDGHRHVISYSRKVFVPLTRL CRDSCGYCTFAKTPRQVEAAFLSPDDVLAIVRAGQAAGCHEALLTLGDKPEARYAAAREFLAAQGVATTVDYVEKICKLI LAETGLLPHVNAGVMSEAETARLRKVSVSQGIMLESVSERLCARGEAHFGSPDKLPAVRLDAIAAAGRLRVPFTSGILIG IGETRLERVQSLLALRSLHRRYGHLQEIIVQNFRAKADTRFADRHEPGLEDLLWTAAVARLIFGPKMNIQVPPNLSYADY PRLLEAGINDWGGISPVTADHVNPEAPWPEIARLQQATEAVGLTLQPRLAVYPAYVRHAADWIDPALLPKVLKAVDADGF PRDDGWMPGGLAPIPPTGAARRSDPSLEALVVRAAGGTRLSQPEVQALFGARGGDVDMICEAADAVRAASSGETVRYVVN RNINYTNVCSYACKFCAFSKGKTHDHLRGRPYDLSLEEVARRAREAWDRGATEVCMQGGINPHYTGKTYVDLLRAVKNEV PQMHVHAFSPLEVSQGAATLGMSVSNFLSMLRDEGLGSLPGTAAEILDDKVRQVICADKLDTQIWLDIVRSAHRVGLRTT ATIMFGHVEGSDSWAAHLLRIRDLQEQTGGFTEFVPLPFIHMEAPMSLRGQARSGPTWREVRLMHAVARLVLYPLITNIQ ASWVKLGEDGVASLLRSGVNDLGGTLMNESISRAAGTQHGQELAPEAMEALITRAGRVAEQRTTLYRPVDAERRDASFAA PELQDLVMTPFVPKQMALAR >Mature_820_residues MIASRSDDDVRTQDERRGRRHNEMKVDDMVWDTRDAEALLRAYQAMPMAELLDEAATLARDGHRHVISYSRKVFVPLTRL CRDSCGYCTFAKTPRQVEAAFLSPDDVLAIVRAGQAAGCHEALLTLGDKPEARYAAAREFLAAQGVATTVDYVEKICKLI LAETGLLPHVNAGVMSEAETARLRKVSVSQGIMLESVSERLCARGEAHFGSPDKLPAVRLDAIAAAGRLRVPFTSGILIG IGETRLERVQSLLALRSLHRRYGHLQEIIVQNFRAKADTRFADRHEPGLEDLLWTAAVARLIFGPKMNIQVPPNLSYADY PRLLEAGINDWGGISPVTADHVNPEAPWPEIARLQQATEAVGLTLQPRLAVYPAYVRHAADWIDPALLPKVLKAVDADGF PRDDGWMPGGLAPIPPTGAARRSDPSLEALVVRAAGGTRLSQPEVQALFGARGGDVDMICEAADAVRAASSGETVRYVVN RNINYTNVCSYACKFCAFSKGKTHDHLRGRPYDLSLEEVARRAREAWDRGATEVCMQGGINPHYTGKTYVDLLRAVKNEV PQMHVHAFSPLEVSQGAATLGMSVSNFLSMLRDEGLGSLPGTAAEILDDKVRQVICADKLDTQIWLDIVRSAHRVGLRTT ATIMFGHVEGSDSWAAHLLRIRDLQEQTGGFTEFVPLPFIHMEAPMSLRGQARSGPTWREVRLMHAVARLVLYPLITNIQ ASWVKLGEDGVASLLRSGVNDLGGTLMNESISRAAGTQHGQELAPEAMEALITRAGRVAEQRTTLYRPVDAERRDASFAA PELQDLVMTPFVPKQMALAR
Specific function: Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO) [H]
COG id: COG1060
COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the radical SAM superfamily. CofH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR019940 - InterPro: IPR006638 - InterPro: IPR019939 - InterPro: IPR020050 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 89900; Mature: 89900
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIASRSDDDVRTQDERRGRRHNEMKVDDMVWDTRDAEALLRAYQAMPMAELLDEAATLAR CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH DGHRHVISYSRKVFVPLTRLCRDSCGYCTFAKTPRQVEAAFLSPDDVLAIVRAGQAAGCH CCCHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCHH EALLTLGDKPEARYAAAREFLAAQGVATTVDYVEKICKLILAETGLLPHVNAGVMSEAET HHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH ARLRKVSVSQGIMLESVSERLCARGEAHFGSPDKLPAVRLDAIAAAGRLRVPFTSGILIG HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCEEEE IGETRLERVQSLLALRSLHRRYGHLQEIIVQNFRAKADTRFADRHEPGLEDLLWTAAVAR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH LIFGPKMNIQVPPNLSYADYPRLLEAGINDWGGISPVTADHVNPEAPWPEIARLQQATEA HHHCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VGLTLQPRLAVYPAYVRHAADWIDPALLPKVLKAVDADGFPRDDGWMPGGLAPIPPTGAA HCCEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC RRSDPSLEALVVRAAGGTRLSQPEVQALFGARGGDVDMICEAADAVRAASSGETVRYVVN CCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE RNINYTNVCSYACKFCAFSKGKTHDHLRGRPYDLSLEEVARRAREAWDRGATEVCMQGGI CCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCC NPHYTGKTYVDLLRAVKNEVPQMHVHAFSPLEVSQGAATLGMSVSNFLSMLRDEGLGSLP CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCC GTAAEILDDKVRQVICADKLDTQIWLDIVRSAHRVGLRTTATIMFGHVEGSDSWAAHLLR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHHH IRDLQEQTGGFTEFVPLPFIHMEAPMSLRGQARSGPTWREVRLMHAVARLVLYPLITNIQ HHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH ASWVKLGEDGVASLLRSGVNDLGGTLMNESISRAAGTQHGQELAPEAMEALITRAGRVAE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH QRTTLYRPVDAERRDASFAAPELQDLVMTPFVPKQMALAR HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCC >Mature Secondary Structure MIASRSDDDVRTQDERRGRRHNEMKVDDMVWDTRDAEALLRAYQAMPMAELLDEAATLAR CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH DGHRHVISYSRKVFVPLTRLCRDSCGYCTFAKTPRQVEAAFLSPDDVLAIVRAGQAAGCH CCCHHHHHHCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCHH EALLTLGDKPEARYAAAREFLAAQGVATTVDYVEKICKLILAETGLLPHVNAGVMSEAET HHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH ARLRKVSVSQGIMLESVSERLCARGEAHFGSPDKLPAVRLDAIAAAGRLRVPFTSGILIG HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCEEEE IGETRLERVQSLLALRSLHRRYGHLQEIIVQNFRAKADTRFADRHEPGLEDLLWTAAVAR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH LIFGPKMNIQVPPNLSYADYPRLLEAGINDWGGISPVTADHVNPEAPWPEIARLQQATEA HHHCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH VGLTLQPRLAVYPAYVRHAADWIDPALLPKVLKAVDADGFPRDDGWMPGGLAPIPPTGAA HCCEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC RRSDPSLEALVVRAAGGTRLSQPEVQALFGARGGDVDMICEAADAVRAASSGETVRYVVN CCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE RNINYTNVCSYACKFCAFSKGKTHDHLRGRPYDLSLEEVARRAREAWDRGATEVCMQGGI CCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCC NPHYTGKTYVDLLRAVKNEVPQMHVHAFSPLEVSQGAATLGMSVSNFLSMLRDEGLGSLP CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCC GTAAEILDDKVRQVICADKLDTQIWLDIVRSAHRVGLRTTATIMFGHVEGSDSWAAHLLR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHHHHHHHH IRDLQEQTGGFTEFVPLPFIHMEAPMSLRGQARSGPTWREVRLMHAVARLVLYPLITNIQ HHHHHHHHCCCEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH ASWVKLGEDGVASLLRSGVNDLGGTLMNESISRAAGTQHGQELAPEAMEALITRAGRVAE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH QRTTLYRPVDAERRDASFAAPELQDLVMTPFVPKQMALAR HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]