Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

Click here to switch to the map view.

The map label for this gene is yxbG [H]

Identifier: 86751430

GI number: 86751430

Start: 4911504

End: 4912376

Strand: Reverse

Name: yxbG [H]

Synonym: RPB_4328

Alternate gene names: 86751430

Gene position: 4912376-4911504 (Counterclockwise)

Preceding gene: 86751431

Following gene: 86751429

Centisome position: 92.14

GC content: 66.44

Gene sequence:

>873_bases
GTGCCGGTTGCGCTTCGCTTCATCCGGGCTACAACGCTTCCCAAGACGCAACGACGAAAGAAGACACGCATGCCACGACT
TGAAGGCAAGACCGCGCTGGTGGTCGGCGCCGGTTCGATCGGGCCGGGCTGGGGCAACGGCAAGGCGACCGCGGTGACGT
TCGCGCGCGAGGGCGCGCAGGTGTTCTGCGTCGACCGCAATCGCGACGCCGCGCAGGAGACCGTCGACATCATCAAATCG
GAGGGCGGCCGCGCCATCGCGTTCGCCGCCGACGTGTCGCGCGCGGCCGATGTCGAGGCGATGGTGAAAGCCTGCGTCGA
CGCCTGGGGCGGCATCGACGTGCTCGACAACAATGTCGGCATCGCCGAAACCGGCGGCGTGGTCGAGGTCTCCGAGGCCG
AGTGGGACCGCGTGTTCGCGGTCAATCTGAAGAGCGCCTTCCTGGCGATGAAACACGTCGTCCCGATCATGCAGCGCCAG
GGCGGCGGCTCGATCATCAATATCTCGTCGATCGCCTCGATCCGGCATCTCGGCATCTCCTACGTCACCTACGCGGCGTC
GAAGGCGGCGATGAATGCGATGACGCGCACCACCGCAGTGGAATACGCCAAGGACCACGTCCGGGTGAACTGCATCCTGC
CCGGCCTGATGAAGACGCCGATGGTCGCGCATTCCGCGGGGCTGGCGGCGAGCTACGCCGCCGGCGACGTCGAGGCGATG
TGGCGCGCGCGCGACGCGCAGGTGCCGATGGGGCACATGGGTGACGCCTGGGATGTCGCAAATGCCGCATTGTTTCTCGC
CAGCGACGAGTCGAAATACGTCACCGGCCTCGAATTGGTGGTCGACGGCGGCCTGACGCTGAAGGTGAACTGA

Upstream 100 bases:

>100_bases
AGCCGAGCGCTGCGACTCGCGGAGACGCCCCCTCACCCGGTGAGCATGCGCTTCGCACATGCTCACCACCCTCTCCCCGC
AGGCGGGGCGAGGGTGCGCC

Downstream 100 bases:

>100_bases
AGTGATGGGTCGCGGCCGTCATCCTGAGCGCAGCGGGCCTCGAAGGATGAAAGCGAGTCCATGCCGGCTCATCCTTCGAG
GCGCGCGCAAGAGCGCGCGC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MPVALRFIRATTLPKTQRRKKTRMPRLEGKTALVVGAGSIGPGWGNGKATAVTFAREGAQVFCVDRNRDAAQETVDIIKS
EGGRAIAFAADVSRAADVEAMVKACVDAWGGIDVLDNNVGIAETGGVVEVSEAEWDRVFAVNLKSAFLAMKHVVPIMQRQ
GGGSIINISSIASIRHLGISYVTYAASKAAMNAMTRTTAVEYAKDHVRVNCILPGLMKTPMVAHSAGLAASYAAGDVEAM
WRARDAQVPMGHMGDAWDVANAALFLASDESKYVTGLELVVDGGLTLKVN

Sequences:

>Translated_290_residues
MPVALRFIRATTLPKTQRRKKTRMPRLEGKTALVVGAGSIGPGWGNGKATAVTFAREGAQVFCVDRNRDAAQETVDIIKS
EGGRAIAFAADVSRAADVEAMVKACVDAWGGIDVLDNNVGIAETGGVVEVSEAEWDRVFAVNLKSAFLAMKHVVPIMQRQ
GGGSIINISSIASIRHLGISYVTYAASKAAMNAMTRTTAVEYAKDHVRVNCILPGLMKTPMVAHSAGLAASYAAGDVEAM
WRARDAQVPMGHMGDAWDVANAALFLASDESKYVTGLELVVDGGLTLKVN
>Mature_289_residues
PVALRFIRATTLPKTQRRKKTRMPRLEGKTALVVGAGSIGPGWGNGKATAVTFAREGAQVFCVDRNRDAAQETVDIIKSE
GGRAIAFAADVSRAADVEAMVKACVDAWGGIDVLDNNVGIAETGGVVEVSEAEWDRVFAVNLKSAFLAMKHVVPIMQRQG
GGSIINISSIASIRHLGISYVTYAASKAAMNAMTRTTAVEYAKDHVRVNCILPGLMKTPMVAHSAGLAASYAAGDVEAMW
RARDAQVPMGHMGDAWDVANAALFLASDESKYVTGLELVVDGGLTLKVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=274, Percent_Identity=37.956204379562, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI32483357, Length=270, Percent_Identity=31.8518518518519, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI66933014, Length=274, Percent_Identity=30.6569343065693, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=29.8449612403101, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=31.3253012048193, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI126723750, Length=273, Percent_Identity=28.9377289377289, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=32.6271186440678, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI126723191, Length=202, Percent_Identity=32.6732673267327, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=26.3157894736842, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI7705925, Length=261, Percent_Identity=30.2681992337165, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI10190704, Length=260, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=37.5, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI109715829, Length=203, Percent_Identity=30.0492610837438, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI4503301, Length=230, Percent_Identity=26.5217391304348, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=28.921568627451, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI210032110, Length=213, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=264, Percent_Identity=35.6060606060606, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1790717, Length=264, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787335, Length=261, Percent_Identity=32.9501915708812, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=32.6996197718631, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=36.5461847389558, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787905, Length=268, Percent_Identity=33.955223880597, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=33.587786259542, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786812, Length=279, Percent_Identity=29.3906810035842, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.8617886178862, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789378, Length=276, Percent_Identity=28.2608695652174, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=28.8537549407115, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367365, Length=263, Percent_Identity=27.7566539923954, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787526, Length=264, Percent_Identity=26.5151515151515, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=269, Percent_Identity=33.457249070632, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI25147288, Length=267, Percent_Identity=34.8314606741573, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=276, Percent_Identity=31.8840579710145, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=32.1167883211679, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=276, Percent_Identity=32.9710144927536, Blast_Score=117, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17559104, Length=274, Percent_Identity=33.2116788321168, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI17555706, Length=266, Percent_Identity=34.5864661654135, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=31.4814814814815, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=31.6176470588235, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=279, Percent_Identity=30.8243727598566, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17562908, Length=279, Percent_Identity=31.8996415770609, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=29.7794117647059, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=30.1470588235294, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17544670, Length=282, Percent_Identity=31.2056737588652, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=32.4324324324324, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=33.6032388663968, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=281, Percent_Identity=30.2491103202847, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=274, Percent_Identity=28.8321167883212, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=275, Percent_Identity=27.2727272727273, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=28.8888888888889, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=27.7777777777778, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=25.2032520325203, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=31.3953488372093, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17538486, Length=274, Percent_Identity=27.7372262773723, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=32.8282828282828, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17564282, Length=167, Percent_Identity=33.5329341317365, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17508651, Length=271, Percent_Identity=26.9372693726937, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=225, Percent_Identity=26.2222222222222, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=245, Percent_Identity=30.2040816326531, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=213, Percent_Identity=27.6995305164319, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=261, Percent_Identity=28.735632183908, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=213, Percent_Identity=26.2910798122066, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=276, Percent_Identity=28.9855072463768, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=214, Percent_Identity=28.0373831775701, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=27.4809160305344, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=206, Percent_Identity=27.6699029126214, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193207185, Length=150, Percent_Identity=31.3333333333333, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=183, Percent_Identity=31.6939890710383, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=30, Blast_Score=66, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639444, Length=263, Percent_Identity=37.6425855513308, Blast_Score=144, Evalue=5e-35,
Organism=Drosophila melanogaster, GI21357041, Length=262, Percent_Identity=35.8778625954198, Blast_Score=134, Evalue=6e-32,
Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=36.046511627907, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21355319, Length=270, Percent_Identity=30, Blast_Score=121, Evalue=6e-28,
Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=33.206106870229, Blast_Score=121, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=33.0769230769231, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24644337, Length=232, Percent_Identity=30.1724137931034, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=32.8282828282828, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=264, Percent_Identity=29.9242424242424, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281364892, Length=218, Percent_Identity=32.1100917431193, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24640492, Length=210, Percent_Identity=29.5238095238095, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24649181, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21355631, Length=216, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=25.8706467661692, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221510726, Length=169, Percent_Identity=28.4023668639053, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737361, Length=273, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21358495, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30705; Mature: 30573

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPVALRFIRATTLPKTQRRKKTRMPRLEGKTALVVGAGSIGPGWGNGKATAVTFAREGAQ
CCCEEEEEHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCE
VFCVDRNRDAAQETVDIIKSEGGRAIAFAADVSRAADVEAMVKACVDAWGGIDVLDNNVG
EEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCHHCCHHHHHHHHHHHCCCCEEEECCCC
IAETGGVVEVSEAEWDRVFAVNLKSAFLAMKHVVPIMQRQGGGSIINISSIASIRHLGIS
EECCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCHH
YVTYAASKAAMNAMTRTTAVEYAKDHVRVNCILPGLMKTPMVAHSAGLAASYAAGDVEAM
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHCCCHHHHCCCEEHHCCCCHHHH
WRARDAQVPMGHMGDAWDVANAALFLASDESKYVTGLELVVDGGLTLKVN
HHHCCCCCCCCCCCCCHHHCCEEEEEECCCCCEEEEEEEEEECCEEEEEC
>Mature Secondary Structure 
PVALRFIRATTLPKTQRRKKTRMPRLEGKTALVVGAGSIGPGWGNGKATAVTFAREGAQ
CCEEEEEHHHCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCE
VFCVDRNRDAAQETVDIIKSEGGRAIAFAADVSRAADVEAMVKACVDAWGGIDVLDNNVG
EEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCHHCCHHHHHHHHHHHCCCCEEEECCCC
IAETGGVVEVSEAEWDRVFAVNLKSAFLAMKHVVPIMQRQGGGSIINISSIASIRHLGIS
EECCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCHH
YVTYAASKAAMNAMTRTTAVEYAKDHVRVNCILPGLMKTPMVAHSAGLAASYAAGDVEAM
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHCCCHHHHCCCEEHHCCCCHHHH
WRARDAQVPMGHMGDAWDVANAALFLASDESKYVTGLELVVDGGLTLKVN
HHHCCCCCCCCCCCCCHHHCCEEEEEECCCCCEEEEEEEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]