Click here to switch to the map view.

The map label for this gene is 86751429

Identifier: 86751429

GI number: 86751429

Start: 4910598

End: 4911383

Strand: Reverse

Name: 86751429

Synonym: RPB_4327

Alternate gene names: NA

Gene position: 4911383-4910598 (Counterclockwise)

Preceding gene: 86751430

Following gene: 86751428

Centisome position: 92.12

GC content: 69.97

Gene sequence:

>786_bases
ATGTTGGACGGCAGAACCAATCGATCCATGCGTTGGTTGTCCGCAGCAGGTGTTTTGCTCGCGCTGCTCGCCGCGGCGCC
GGCGCTCGCGACCGGCGTCGACGATCTCGACGATCCGACGCTCGATCCGGCGCCGTGTCTCGCCGCGGCGGCGCAGCGGG
ACGACGATCGCGCAGTCGAGTTGTGCGGCAGGCTGATCGCCAAACGCAATACCGGGCGGGACGACCGCATCAAGGCGCTG
ATTGCGCGCGCCGGCGCGCTCATCCGCAAGCAGCAGATCGACCGCGCGCTCGCCGATTACGACGACGTGCTGCGGCTCGA
TCCGAAGCAGCCGGATATCCACAATGCCCGCGGCGAGCTGTGGCTCGGCAAGGGCGATCACCCCAAGGCACTGGCGGATT
TCTCCGCGGCACTCAAGCTGCGGCGCGATCACCCCGCCGCGCGCGCCAATCACAGGGCGCTGGCGACCGAGCTGGAGCGG
CTCGGCGTGCAGAAGGCGGTCGACGGCAAGCCGAGCTTCGACTGCCGACGCGCCCGCCGCGCCGTCGAGAAGGCGATCTG
CGGGGATCGCGATCTCGCCAATCTCGACCGCGAGATCGCCGCGATGCACCTCCGCATCCTGCAGGACAAAGCCAGCGCGA
AGCCGGCCGAGCTGCGCGCGCTGAAACGTGCGCAGGCCGACTTCCTCGCCAACCGCAACGCCTCGTTCGGCCGGCCGGGC
TACGATCTGCGCGCCGCGATGAAGACGCGGCTGCAGCAACTGACCGGCGCGGCCGGCGGCCGATAG

Upstream 100 bases:

>100_bases
ATCCTGAGCGCAGCGGGCCTCGAAGGATGAAAGCGAGTCCATGCCGGCTCATCCTTCGAGGCGCGCGCAAGAGCGCGCGC
ACCTCAGGATGACGGATCGC

Downstream 100 bases:

>100_bases
AGGCTGTTCCGGGCCGACGCCGGGATTTGCGAACCTCGGTATCCCCCCGGACGTGTCCGTTTCGGCCTTGAAACCCGGGC
GCACCCGGCCACAATGCCGC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLDGRTNRSMRWLSAAGVLLALLAAAPALATGVDDLDDPTLDPAPCLAAAAQRDDDRAVELCGRLIAKRNTGRDDRIKAL
IARAGALIRKQQIDRALADYDDVLRLDPKQPDIHNARGELWLGKGDHPKALADFSAALKLRRDHPAARANHRALATELER
LGVQKAVDGKPSFDCRRARRAVEKAICGDRDLANLDREIAAMHLRILQDKASAKPAELRALKRAQADFLANRNASFGRPG
YDLRAAMKTRLQQLTGAAGGR

Sequences:

>Translated_261_residues
MLDGRTNRSMRWLSAAGVLLALLAAAPALATGVDDLDDPTLDPAPCLAAAAQRDDDRAVELCGRLIAKRNTGRDDRIKAL
IARAGALIRKQQIDRALADYDDVLRLDPKQPDIHNARGELWLGKGDHPKALADFSAALKLRRDHPAARANHRALATELER
LGVQKAVDGKPSFDCRRARRAVEKAICGDRDLANLDREIAAMHLRILQDKASAKPAELRALKRAQADFLANRNASFGRPG
YDLRAAMKTRLQQLTGAAGGR
>Mature_261_residues
MLDGRTNRSMRWLSAAGVLLALLAAAPALATGVDDLDDPTLDPAPCLAAAAQRDDDRAVELCGRLIAKRNTGRDDRIKAL
IARAGALIRKQQIDRALADYDDVLRLDPKQPDIHNARGELWLGKGDHPKALADFSAALKLRRDHPAARANHRALATELER
LGVQKAVDGKPSFDCRRARRAVEKAICGDRDLANLDREIAAMHLRILQDKASAKPAELRALKRAQADFLANRNASFGRPG
YDLRAAMKTRLQQLTGAAGGR

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28451; Mature: 28451

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDGRTNRSMRWLSAAGVLLALLAAAPALATGVDDLDDPTLDPAPCLAAAAQRDDDRAVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
LCGRLIAKRNTGRDDRIKALIARAGALIRKQQIDRALADYDDVLRLDPKQPDIHNARGEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
WLGKGDHPKALADFSAALKLRRDHPAARANHRALATELERLGVQKAVDGKPSFDCRRARR
EECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVEKAICGDRDLANLDREIAAMHLRILQDKASAKPAELRALKRAQADFLANRNASFGRPG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YDLRAAMKTRLQQLTGAAGGR
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLDGRTNRSMRWLSAAGVLLALLAAAPALATGVDDLDDPTLDPAPCLAAAAQRDDDRAVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
LCGRLIAKRNTGRDDRIKALIARAGALIRKQQIDRALADYDDVLRLDPKQPDIHNARGEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
WLGKGDHPKALADFSAALKLRRDHPAARANHRALATELERLGVQKAVDGKPSFDCRRARR
EECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
AVEKAICGDRDLANLDREIAAMHLRILQDKASAKPAELRALKRAQADFLANRNASFGRPG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
YDLRAAMKTRLQQLTGAAGGR
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA