| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is prpE [C]
Identifier: 86751428
GI number: 86751428
Start: 4908470
End: 4910380
Strand: Reverse
Name: prpE [C]
Synonym: RPB_4326
Alternate gene names: 86751428
Gene position: 4910380-4908470 (Counterclockwise)
Preceding gene: 86751429
Following gene: 86751427
Centisome position: 92.1
GC content: 66.35
Gene sequence:
>1911_bases ATGAATATCCAGGACAAGAGCCGTTATCGCGAGGTTCATGCCCGCTCGCTGGCCGACCCCGAGGGCTTCTGGGCCGAGGC CGCGCGCGAGATCGACTGGATCGTGCCGGCCACCAAAGTGTTCGATCCCTCGCAAGGCCTGTACGGCCGCTGGTTCGCCG GCGCCAAGGTCAACACCTGCTACAACGCGCTCGACCGCCACGTCGCCAACGGCCGCGCCGACCAGGTGGCGCTGATCCAC GATTCGCCGCTGACCGGCACGATCAGCACCTTCACCTATGCGGAGATGCTGCGCGAAGTGCAGGCGCTCGCCGCGGTGAT GCAGGATTTCGGCGTGGAGAAGGGCGACCGCGTCATTCTCTACATGCCGATGGTGCCGGAATCGATGGTGGCGATGCTGG CCTGCGCCCGCATCGGCGCGGTGCATTCGGTGGTGTTCGGCGGCTTCGCGGCGAAAGAACTCGCCACCCGGATCGACGAC GCCAAGCCGAAGCTGATTCTCTCCGCGAGCTGCGGCATCGAGCCCGGCCGCATCGTCAAGTACAAGCCGCTGCTCGACGA GGCGATCGGCCTGTCCTCCGCCAAGCCCGACGCCTGCATCATCCTGAAGCGGCCGCAGCAGGATTGCGACCTGGTCGAAG GCCGCGATCACGATTGGGGCAAGCTGCGCTCCGAGGCGCTCGCCGCCGGCAAGACGGCCGAATGCGTCGCGGTCGACGCC ACCGATCCGCTCTACATCCTCTACACCTCGGGCACCACCGGCAAGCCGAAGGGCGTAGTGCGGGACAATGGCGGCCATCT GGTCGCGCTGAAATGGTCGATGGAGAATCTCTACGGCGTCAAGCCCGGCGAGGTGTGGTGGTGCGCCTCCGACATCGGCT GGGTGGTCGGCCACAGCTACATCATCTACGGCCCGCTGATCCATGGCGCGACCTCGATCATGTATGAAGGCAAGCCGGTC GGCACGCCGGACCCCGGCGCGTTCTGGCGGGTGATCGCCGAGCACGGCGCTGTGGCGCTGTTCACGGCGCCGACGGCGTT TCGAGCGATCCGCAAGGACGATCCCGACGGCAGCTTCATGCGCAAATACGATCTGTCGAAACTGCGCACGCTGTTCCTGG CCGGCGAGCGCGCCGATCCGCCGACGGTGGAATGGGCCGAGCAGCAATTGAAGGTGCCGGTGATCGATCACTGGTGGCAG ACCGAAACCGGCTGGTGCATCGCCGGCAATCCGGTCGGATTGGGTCTGTTGCCGGTCAAGCACGGCTCGCCGACGGTGCC GATGCCGGGTTACGACGTCCGGGTGGTGGACGAGGGCAGCAAGCCGGTGCCCGCCGGCACCATGGGCTCGATCGTGATCA AGCTGCCGCTGCCGCCCGGCAACCTGCCGACGCTGTGGCAGCAGGACGAGCGCTGCCGCGAGAGCTACTTCGCCGACTTT CCCGGTTACTACAAGACCTCCGACGCCGGCTACATGGACGAAGACGGCTACGTCTTCGTGATGGGCCGCACCGACGACAT CATCAACGTCGCCGGCCATCGGCTCTCGACCGGCGGCATGGAGGAGATTCTCGCCTCGCATCCGGACGTCGCCGAATGCG CCGTGCTCGGCATCAACGACACCATCAAGGGTGAAGTGCCCTGCGGTCTCATCGTGCTGAAGAGCGGCGTCACCCGCGAT CACGCCGAGATCGAGAAGGAGATCGTCAAGCTGGTGCGCGACAAGCTCGGCCCGGTCGCCGCCTTCAAGCTGGCGATCAC CGTGCCGCGGCTGCCCAAGACCCGCTCCGGCAAGATCCTGCGCGGCACCATCAAGAAGATCGCCGACGGCGACGAATGGG CGATGCCGGCCACGATCGAGGACCCGACCGCGCTCGACGACATCTCCTCGGCGCTGAAGAGCCATAGCTGA
Upstream 100 bases:
>100_bases CAGCGCCCCTGCTTGATTAGGAACAAAGGCGGGGTTGTCAGCAGCGGCTAAAAGCCGGACATGGCGGGCAAACCGCCCGA GATCGATGGGAGCAGACGCC
Downstream 100 bases:
>100_bases GCGCAGGGCGCCCGAGCGAGGCAGCGCGCGCTGCGGACTTACAAACTCCGCAATTGGCGGTAAACAGGCATCGGCCTCTC AACGGTCATTCCGGGGCGCC
Product: AMP-dependent synthetase and ligase
Products: AMP; diphosphate; acetyl-CoA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MNIQDKSRYREVHARSLADPEGFWAEAAREIDWIVPATKVFDPSQGLYGRWFAGAKVNTCYNALDRHVANGRADQVALIH DSPLTGTISTFTYAEMLREVQALAAVMQDFGVEKGDRVILYMPMVPESMVAMLACARIGAVHSVVFGGFAAKELATRIDD AKPKLILSASCGIEPGRIVKYKPLLDEAIGLSSAKPDACIILKRPQQDCDLVEGRDHDWGKLRSEALAAGKTAECVAVDA TDPLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGVKPGEVWWCASDIGWVVGHSYIIYGPLIHGATSIMYEGKPV GTPDPGAFWRVIAEHGAVALFTAPTAFRAIRKDDPDGSFMRKYDLSKLRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQ TETGWCIAGNPVGLGLLPVKHGSPTVPMPGYDVRVVDEGSKPVPAGTMGSIVIKLPLPPGNLPTLWQQDERCRESYFADF PGYYKTSDAGYMDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGINDTIKGEVPCGLIVLKSGVTRD HAEIEKEIVKLVRDKLGPVAAFKLAITVPRLPKTRSGKILRGTIKKIADGDEWAMPATIEDPTALDDISSALKSHS
Sequences:
>Translated_636_residues MNIQDKSRYREVHARSLADPEGFWAEAAREIDWIVPATKVFDPSQGLYGRWFAGAKVNTCYNALDRHVANGRADQVALIH DSPLTGTISTFTYAEMLREVQALAAVMQDFGVEKGDRVILYMPMVPESMVAMLACARIGAVHSVVFGGFAAKELATRIDD AKPKLILSASCGIEPGRIVKYKPLLDEAIGLSSAKPDACIILKRPQQDCDLVEGRDHDWGKLRSEALAAGKTAECVAVDA TDPLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGVKPGEVWWCASDIGWVVGHSYIIYGPLIHGATSIMYEGKPV GTPDPGAFWRVIAEHGAVALFTAPTAFRAIRKDDPDGSFMRKYDLSKLRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQ TETGWCIAGNPVGLGLLPVKHGSPTVPMPGYDVRVVDEGSKPVPAGTMGSIVIKLPLPPGNLPTLWQQDERCRESYFADF PGYYKTSDAGYMDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGINDTIKGEVPCGLIVLKSGVTRD HAEIEKEIVKLVRDKLGPVAAFKLAITVPRLPKTRSGKILRGTIKKIADGDEWAMPATIEDPTALDDISSALKSHS >Mature_636_residues MNIQDKSRYREVHARSLADPEGFWAEAAREIDWIVPATKVFDPSQGLYGRWFAGAKVNTCYNALDRHVANGRADQVALIH DSPLTGTISTFTYAEMLREVQALAAVMQDFGVEKGDRVILYMPMVPESMVAMLACARIGAVHSVVFGGFAAKELATRIDD AKPKLILSASCGIEPGRIVKYKPLLDEAIGLSSAKPDACIILKRPQQDCDLVEGRDHDWGKLRSEALAAGKTAECVAVDA TDPLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGVKPGEVWWCASDIGWVVGHSYIIYGPLIHGATSIMYEGKPV GTPDPGAFWRVIAEHGAVALFTAPTAFRAIRKDDPDGSFMRKYDLSKLRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQ TETGWCIAGNPVGLGLLPVKHGSPTVPMPGYDVRVVDEGSKPVPAGTMGSIVIKLPLPPGNLPTLWQQDERCRESYFADF PGYYKTSDAGYMDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGINDTIKGEVPCGLIVLKSGVTRD HAEIEKEIVKLVRDKLGPVAAFKLAITVPRLPKTRSGKILRGTIKKIADGDEWAMPATIEDPTALDDISSALKSHS
Specific function: Catalyzes The Synthesis Of Propionyl-CoA From Propionate And CoA. Also Converts Acetate To Acetyl-CoA But With A Lower Specific Activity (By Similarity). [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=636, Percent_Identity=52.0440251572327, Blast_Score=700, Evalue=0.0, Organism=Homo sapiens, GI8923896, Length=667, Percent_Identity=36.5817091454273, Blast_Score=407, Evalue=1e-113, Organism=Homo sapiens, GI253970489, Length=675, Percent_Identity=36.4444444444444, Blast_Score=405, Evalue=1e-113, Organism=Homo sapiens, GI28416953, Length=636, Percent_Identity=36.4779874213836, Blast_Score=371, Evalue=1e-102, Organism=Homo sapiens, GI42544132, Length=522, Percent_Identity=27.3946360153257, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI115511026, Length=547, Percent_Identity=28.3363802559415, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI38505220, Length=533, Percent_Identity=27.0168855534709, Blast_Score=177, Evalue=3e-44, Organism=Homo sapiens, GI58082049, Length=531, Percent_Identity=26.7419962335217, Blast_Score=165, Evalue=1e-40, Organism=Homo sapiens, GI31982927, Length=640, Percent_Identity=25.9375, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI157311624, Length=535, Percent_Identity=26.7289719626168, Blast_Score=163, Evalue=5e-40, Organism=Homo sapiens, GI157311622, Length=535, Percent_Identity=26.7289719626168, Blast_Score=163, Evalue=5e-40, Organism=Homo sapiens, GI122937307, Length=518, Percent_Identity=25.2895752895753, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI195947378, Length=430, Percent_Identity=24.4186046511628, Blast_Score=106, Evalue=7e-23, Organism=Homo sapiens, GI42544134, Length=382, Percent_Identity=23.5602094240838, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI156151445, Length=628, Percent_Identity=23.4076433121019, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI187761345, Length=394, Percent_Identity=26.3959390862944, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI187761343, Length=394, Percent_Identity=26.3959390862944, Blast_Score=92, Evalue=2e-18, Organism=Escherichia coli, GI1786529, Length=631, Percent_Identity=45.0079239302694, Blast_Score=520, Evalue=1e-148, Organism=Escherichia coli, GI1790505, Length=642, Percent_Identity=38.3177570093458, Blast_Score=423, Evalue=1e-119, Organism=Escherichia coli, GI221142682, Length=546, Percent_Identity=22.7106227106227, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI145693145, Length=554, Percent_Identity=24.7292418772563, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1786801, Length=524, Percent_Identity=25, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI1788107, Length=557, Percent_Identity=25.673249551167, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1786810, Length=553, Percent_Identity=20.253164556962, Blast_Score=69, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71983001, Length=640, Percent_Identity=35.46875, Blast_Score=355, Evalue=6e-98, Organism=Caenorhabditis elegans, GI71982997, Length=640, Percent_Identity=35.46875, Blast_Score=353, Evalue=1e-97, Organism=Caenorhabditis elegans, GI17569507, Length=655, Percent_Identity=22.9007633587786, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17558820, Length=530, Percent_Identity=23.7735849056604, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560308, Length=563, Percent_Identity=23.9786856127886, Blast_Score=108, Evalue=7e-24, Organism=Caenorhabditis elegans, GI32563687, Length=528, Percent_Identity=22.1590909090909, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17559526, Length=562, Percent_Identity=21.1743772241993, Blast_Score=103, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71985884, Length=573, Percent_Identity=22.8621291448517, Blast_Score=102, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17531443, Length=535, Percent_Identity=23.1775700934579, Blast_Score=99, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17557194, Length=542, Percent_Identity=24.5387453874539, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17538037, Length=184, Percent_Identity=30.9782608695652, Blast_Score=87, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6319264, Length=646, Percent_Identity=35.4489164086687, Blast_Score=404, Evalue=1e-113, Organism=Saccharomyces cerevisiae, GI6323182, Length=653, Percent_Identity=35.2220520673813, Blast_Score=401, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6319699, Length=514, Percent_Identity=25.0972762645914, Blast_Score=110, Evalue=6e-25, Organism=Drosophila melanogaster, GI21355225, Length=632, Percent_Identity=46.9936708860759, Blast_Score=619, Evalue=1e-177, Organism=Drosophila melanogaster, GI24667955, Length=639, Percent_Identity=37.5586854460094, Blast_Score=399, Evalue=1e-111, Organism=Drosophila melanogaster, GI62472339, Length=540, Percent_Identity=38.3333333333333, Blast_Score=350, Evalue=2e-96, Organism=Drosophila melanogaster, GI24667959, Length=512, Percent_Identity=37.890625, Blast_Score=319, Evalue=5e-87, Organism=Drosophila melanogaster, GI24648260, Length=409, Percent_Identity=25.4278728606357, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI18859661, Length=532, Percent_Identity=22.7443609022556, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI21355181, Length=525, Percent_Identity=22.6666666666667, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI21356441, Length=410, Percent_Identity=24.390243902439, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI24648257, Length=381, Percent_Identity=25.7217847769029, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI281365686, Length=368, Percent_Identity=23.0978260869565, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI21356947, Length=367, Percent_Identity=22.8882833787466, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24653035, Length=376, Percent_Identity=24.2021276595745, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.1
Molecular weight: Translated: 69246; Mature: 69246
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIQDKSRYREVHARSLADPEGFWAEAAREIDWIVPATKVFDPSQGLYGRWFAGAKVNTC CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCEEECCCHHCCCCCCCCCEEEECCCCHHHH YNALDRHVANGRADQVALIHDSPLTGTISTFTYAEMLREVQALAAVMQDFGVEKGDRVIL HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE YMPMVPESMVAMLACARIGAVHSVVFGGFAAKELATRIDDAKPKLILSASCGIEPGRIVK EECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE YKPLLDEAIGLSSAKPDACIILKRPQQDCDLVEGRDHDWGKLRSEALAAGKTAECVAVDA ECCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC TDPLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGVKPGEVWWCASDIGWVVGHSY CCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEHHHHCCCCCCCEEEEECCCCHHHCCCE IIYGPLIHGATSIMYEGKPVGTPDPGAFWRVIAEHGAVALFTAPTAFRAIRKDDPDGSFM EEEECHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCHHH RKYDLSKLRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTETGWCIAGNPVGLGLLPVK HHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCEECCCCCCCCCEEEECCCCCEEEEEEC HGSPTVPMPGYDVRVVDEGSKPVPAGTMGSIVIKLPLPPGNLPTLWQQDERCRESYFADF CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCC PGYYKTSDAGYMDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIND CCCEECCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCHHHHHHCCCCHHHEEEECCCC TIKGEVPCGLIVLKSGVTRDHAEIEKEIVKLVRDKLGPVAAFKLAITVPRLPKTRSGKIL CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCH RGTIKKIADGDEWAMPATIEDPTALDDISSALKSHS HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MNIQDKSRYREVHARSLADPEGFWAEAAREIDWIVPATKVFDPSQGLYGRWFAGAKVNTC CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCEEECCCHHCCCCCCCCCEEEECCCCHHHH YNALDRHVANGRADQVALIHDSPLTGTISTFTYAEMLREVQALAAVMQDFGVEKGDRVIL HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE YMPMVPESMVAMLACARIGAVHSVVFGGFAAKELATRIDDAKPKLILSASCGIEPGRIVK EECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEE YKPLLDEAIGLSSAKPDACIILKRPQQDCDLVEGRDHDWGKLRSEALAAGKTAECVAVDA ECCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC TDPLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGVKPGEVWWCASDIGWVVGHSY CCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEHHHHCCCCCCCEEEEECCCCHHHCCCE IIYGPLIHGATSIMYEGKPVGTPDPGAFWRVIAEHGAVALFTAPTAFRAIRKDDPDGSFM EEEECHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCHHH RKYDLSKLRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTETGWCIAGNPVGLGLLPVK HHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCEECCCCCCCCCEEEECCCCCEEEEEEC HGSPTVPMPGYDVRVVDEGSKPVPAGTMGSIVIKLPLPPGNLPTLWQQDERCRESYFADF CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCC PGYYKTSDAGYMDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIND CCCEECCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCHHHHHHCCCCHHHEEEECCCC TIKGEVPCGLIVLKSGVTRDHAEIEKEIVKLVRDKLGPVAAFKLAITVPRLPKTRSGKIL CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCH RGTIKKIADGDEWAMPATIEDPTALDDISSALKSHS HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; acetate; CoA
Specific reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 1339433 [H]