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The map label for this gene is ymdB [H]

Identifier: 86751390

GI number: 86751390

Start: 4874448

End: 4875272

Strand: Reverse

Name: ymdB [H]

Synonym: RPB_4288

Alternate gene names: 86751390

Gene position: 4875272-4874448 (Counterclockwise)

Preceding gene: 86751391

Following gene: 86751382

Centisome position: 91.44

GC content: 67.76

Gene sequence:

>825_bases
TTGCGCATTCTGTTCATCGGCGACGTCGTCGGCAAATCCGGCCGCACGGCGATCGCCGAACATCTGCCCCGAGCGATCCG
CGACTGGCAGCTCGATTGCACCATCATCAACGGCGAGAACGCCGCCGGCGGCTTCGGCATCACCGAGGCGATCTACAATG
ATTTCATCGACGCCGGCGCCGATGCGGTGACGCTCGGCAACCACGCCTGGAATCAGAAGGAGGCGCTGGTGTTCATCGAG
CGCGCGCCGCGCCTGATCCGCCCGGCGAATTTTCCGCGCCACACGCCGGGCCGCGGCGCCACGCTGGTCGAGACCCGCAA
CGGCGCCCGCGTGCTGGTGATCAACGCGATGGGCCGGGTGTTCATGGAGCCGCTGAACGATCCGTTCGCCGCGGTCGCGC
GTGAGCTCGACGCCTGTCCGCTGCGCGAAGCCGCCGACGCCATCGTGCTGGATTTCCACGGCGAGGCGTCGAGCGAAAAG
CAGGGCATGGGTTACTTCTGCGACGGCAAGGTCAGCCTCGTGGTCGGCACCCATACCCATGTGCCGACCGCCGATCACCA
GATCCTGCCCGGCGGCACCGCCTACATGACCGACGCGGGCATGACCGGCGATTATGATTCCGTGATCGGCATGCACAAGG
ACGAGCCGCTGCAGCGCTTCACCACCGGCATTCCGCAGGGCCGGTTCGAGCCGGCCAACGGCGTCGCGACGCTGAGCGGC
GTCGCGGTCGAGACCGATGATACGACGGGCCTGGCGCTGCGCATCGCCCCGGTCCGTATCGGCGGAAGGCTGGAGCCGGC
GGTGCCGGGGTTCTGGATGAGTTAG

Upstream 100 bases:

>100_bases
CGGTGCAGCAAATCGAGGCGGTCCCCGCCGCCGCCCACGACGTGGCGCTGGATTATGTGATAACGGAACGCGACACGCTC
ATTTTCCGGAGTCGATAGGT

Downstream 100 bases:

>100_bases
CTGCTCGTTCCGTAGGGTGGCGCTGAGCGCAGCGAAGCCCACGCGCACAGCGCTCGGCTTGTGAGCGGGGGCACAGCGCT
ACGCGCCTTTGCGCACCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MRILFIGDVVGKSGRTAIAEHLPRAIRDWQLDCTIINGENAAGGFGITEAIYNDFIDAGADAVTLGNHAWNQKEALVFIE
RAPRLIRPANFPRHTPGRGATLVETRNGARVLVINAMGRVFMEPLNDPFAAVARELDACPLREAADAIVLDFHGEASSEK
QGMGYFCDGKVSLVVGTHTHVPTADHQILPGGTAYMTDAGMTGDYDSVIGMHKDEPLQRFTTGIPQGRFEPANGVATLSG
VAVETDDTTGLALRIAPVRIGGRLEPAVPGFWMS

Sequences:

>Translated_274_residues
MRILFIGDVVGKSGRTAIAEHLPRAIRDWQLDCTIINGENAAGGFGITEAIYNDFIDAGADAVTLGNHAWNQKEALVFIE
RAPRLIRPANFPRHTPGRGATLVETRNGARVLVINAMGRVFMEPLNDPFAAVARELDACPLREAADAIVLDFHGEASSEK
QGMGYFCDGKVSLVVGTHTHVPTADHQILPGGTAYMTDAGMTGDYDSVIGMHKDEPLQRFTTGIPQGRFEPANGVATLSG
VAVETDDTTGLALRIAPVRIGGRLEPAVPGFWMS
>Mature_274_residues
MRILFIGDVVGKSGRTAIAEHLPRAIRDWQLDCTIINGENAAGGFGITEAIYNDFIDAGADAVTLGNHAWNQKEALVFIE
RAPRLIRPANFPRHTPGRGATLVETRNGARVLVINAMGRVFMEPLNDPFAAVARELDACPLREAADAIVLDFHGEASSEK
QGMGYFCDGKVSLVVGTHTHVPTADHQILPGGTAYMTDAGMTGDYDSVIGMHKDEPLQRFTTGIPQGRFEPANGVATLSG
VAVETDDTTGLALRIAPVRIGGRLEPAVPGFWMS

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29347; Mature: 29347

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFIGDVVGKSGRTAIAEHLPRAIRDWQLDCTIINGENAAGGFGITEAIYNDFIDAGA
CEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
DAVTLGNHAWNQKEALVFIERAPRLIRPANFPRHTPGRGATLVETRNGARVLVINAMGRV
CEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHH
FMEPLNDPFAAVARELDACPLREAADAIVLDFHGEASSEKQGMGYFCDGKVSLVVGTHTH
HHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEEEECCCC
VPTADHQILPGGTAYMTDAGMTGDYDSVIGMHKDEPLQRFTTGIPQGRFEPANGVATLSG
CCCCCCEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEE
VAVETDDTTGLALRIAPVRIGGRLEPAVPGFWMS
EEEECCCCCCEEEEEEEEEECCEECCCCCCCCCC
>Mature Secondary Structure
MRILFIGDVVGKSGRTAIAEHLPRAIRDWQLDCTIINGENAAGGFGITEAIYNDFIDAGA
CEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
DAVTLGNHAWNQKEALVFIERAPRLIRPANFPRHTPGRGATLVETRNGARVLVINAMGRV
CEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCHH
FMEPLNDPFAAVARELDACPLREAADAIVLDFHGEASSEKQGMGYFCDGKVSLVVGTHTH
HHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCEEEEEEECCCC
VPTADHQILPGGTAYMTDAGMTGDYDSVIGMHKDEPLQRFTTGIPQGRFEPANGVATLSG
CCCCCCEECCCCCEEEECCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEEE
VAVETDDTTGLALRIAPVRIGGRLEPAVPGFWMS
EEEECCCCCCEEEEEEEEEECCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]