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The map label for this gene is petR [H]

Identifier: 86751280

GI number: 86751280

Start: 4744481

End: 4745206

Strand: Reverse

Name: petR [H]

Synonym: RPB_4173

Alternate gene names: 86751280

Gene position: 4745206-4744481 (Counterclockwise)

Preceding gene: 86751281

Following gene: 86751279

Centisome position: 89.0

GC content: 67.77

Gene sequence:

>726_bases
GTGATCCAATTAGCAACCCTGGCGAAGAAGCCGGTCCGCCCCGCCGACGATGCGCCGCATCTTCTGCTGGTCGACGACGA
CCGGCGCATCCGCGATCTGTTGTCGCGCTTCCTCGCCAGTGAAGGCTATCGCGTCACCACCGCGCAGAGCGGGCGTGATG
CGCGTGCCAAGCTCGCCGGGCTGAATTTCGATCTGTTGATCCTCGACGTGATGATGCCGGGCGAGACCGGATTCGATCTG
GCGCGTTTCATCCGCACCGAGTCGGACGTGCCGATCGTGATGCTGACCGCGCGCCACGAGGCCGAAGCGCGCATCGAGGG
GTTGCAGCTCGGCGCCGATGACTACGTCGCCAAGCCGTTCGAGCCGCGCGAATTGCTGCTGCGGATCTGCAACATCCTCA
AGCGGACCTCGCCGGCGCCGGCGAGCAAGGCCGAGACCATCGCGTTCGGGCCTTACGTGTTTCACATCGACCGCGGCGAA
CTGCGCCAGGGCGACGAGACGATCCATCTCACCGACCGCGAGCGCGACATGCTGCGTGTGCTGGCCGCTGCTCCAGGGGA
GACCGTGCCGCGCGGCGAGCTCACCGGCGGCGGCGGCAACGCCAACGAGCGCGCGGTCGACGTGCAGATCAACCGCCTGC
GCCGCAAGATCGAACGCGACCCGGCCAATCCGCTGTTCCTCCAGGCCGTCCGCGGCATCGGCTATCGCCTGGTCGCGGCG
CCGTAG

Upstream 100 bases:

>100_bases
CCGTGCGCAAGTTCCTGCGCGCCATGATCGATTGCGATGATCCGGACAAGGTGCTCCAGACCATTCTGCAGTCAGACGGC
GCCGTCGCGAAGGATGTCAC

Downstream 100 bases:

>100_bases
CCAGCGATGAGCACGCTCGCCACCGGCCTGACGCTGATCCGCTCCGCCAGGCGGCGGGTGTCGGCCGCCAATGGCTGGAT
GGGGCAGCGCTTCAACGACT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVMMPGETGFDL
ARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGE
LRQGDETIHLTDRERDMLRVLAAAPGETVPRGELTGGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAA
P

Sequences:

>Translated_241_residues
MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVMMPGETGFDL
ARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGE
LRQGDETIHLTDRERDMLRVLAAAPGETVPRGELTGGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAA
P
>Mature_241_residues
MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVMMPGETGFDL
ARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGE
LRQGDETIHLTDRERDMLRVLAAAPGETVPRGELTGGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAA
P

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=41.4096916299559, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1788394, Length=228, Percent_Identity=34.2105263157895, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790863, Length=232, Percent_Identity=33.1896551724138, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=35.3711790393013, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=34.6846846846847, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=36.9565217391304, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=33.4821428571429, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=31.6964285714286, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1786911, Length=229, Percent_Identity=34.061135371179, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=32.3008849557522, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=30.4545454545455, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=30.6306306306306, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=30.3571428571429, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=30.1310043668122, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=34.7457627118644, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790299, Length=102, Percent_Identity=36.2745098039216, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26709; Mature: 26709

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAG
CEECHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCC
LNFDLLILDVMMPGETGFDLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPF
CCEEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHEEECCCCCCCCCC
EPRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGELRQGDETIHLTDRERDMLRV
CHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCEEEEECCHHHHHHH
LAAAPGETVPRGELTGGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAA
HHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEC
P
C
>Mature Secondary Structure
MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAG
CEECHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCC
LNFDLLILDVMMPGETGFDLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPF
CCEEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHEEECCCCCCCCCC
EPRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGELRQGDETIHLTDRERDMLRV
CHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCEEEEECCHHHHHHH
LAAAPGETVPRGELTGGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAA
HHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]