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The map label for this gene is phnF [C]

Identifier: 86751196

GI number: 86751196

Start: 4659397

End: 4660125

Strand: Reverse

Name: phnF [C]

Synonym: RPB_4088

Alternate gene names: 86751196

Gene position: 4660125-4659397 (Counterclockwise)

Preceding gene: 86751209

Following gene: 86751191

Centisome position: 87.4

GC content: 71.47

Gene sequence:

>729_bases
ATGACGACTCTAGAACCGGATTCGGGCGTCGCGCTGTGGCGCAAGGTGGCCGATTCGATCGAGCGCGGGATCGCTGACGG
CCACTACGCGGCAGGCGAGAAGCTGCCCGGCGAGGTCGAGATCGCGCAGGCGCATCGCGTCAATCGCCACACCGTCCGTC
GCGCGCTGGCGGCGCTCGCCGAACGCGGGCTGGTCCGCGCCGAACGCGGCAGCGGCACCTATGTCGAGACCTCGCGGATC
GCCTATCCGCTGCGCTCGCGGACGCGGTTCTCCGAAATCGTCGGCGCCGGCGGCCACGAGCCGCGCGGTCGATTGCTGGC
GGCGAGCCGTGAAGCGGCGACCAAGGATCTGGCGCGGCAGCTCGACCTTGCGGCGGGCGCGCCGCTCATCCGCATCGAGG
GGCTGCGGCTCGCCGACCGCGCGCCGATCTGCGTCGGAACCACCTGGTGCTCGGCCGAGCGCTTCCCGGAGGCCGAAACC
TTGTATCGCCGCTTCGGCTCGATGACCAAGGTGCTGGCGCAGTACGGTGTCTGCGACTATCGCCGCGCCTCGACCCGAAT
CACCGCGGCGATTGCCGACGCCGGCGATGCGGCGCGGCTGGATCTCGGCATCGGCCGCCCGGTGCTGATCGTCGAGGCGC
TGGACGTCGACGGCGAGGGGCACCCGCTGCTGGCGATCCGCTCCCGCTTCGCCGCGGAACGGGTCCAGTTCGTGGTCGAG
ACGGAGTAG

Upstream 100 bases:

>100_bases
TCTGTGATAATAGACAACTTGATAAAGCCGCGCCATGACTTTTTGATGACGGCGCGACGAAATCGCGCGGCCGCGACGAC
GATCGAACGGATGTGGATGG

Downstream 100 bases:

>100_bases
CTCCGTTCCGTCGCTTCGCACCGCCCACAATCGTCATCGCCCGCGAAAGCGGGCGACCCAGTATTCCAGAGAGTCGGCGC
ATCATTTGCGATGCCGCGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRHTVRRALAALAERGLVRAERGSGTYVETSRI
AYPLRSRTRFSEIVGAGGHEPRGRLLAASREAATKDLARQLDLAAGAPLIRIEGLRLADRAPICVGTTWCSAERFPEAET
LYRRFGSMTKVLAQYGVCDYRRASTRITAAIADAGDAARLDLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVE
TE

Sequences:

>Translated_242_residues
MTTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRHTVRRALAALAERGLVRAERGSGTYVETSRI
AYPLRSRTRFSEIVGAGGHEPRGRLLAASREAATKDLARQLDLAAGAPLIRIEGLRLADRAPICVGTTWCSAERFPEAET
LYRRFGSMTKVLAQYGVCDYRRASTRITAAIADAGDAARLDLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVE
TE
>Mature_241_residues
TTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRHTVRRALAALAERGLVRAERGSGTYVETSRIA
YPLRSRTRFSEIVGAGGHEPRGRLLAASREAATKDLARQLDLAAGAPLIRIEGLRLADRAPICVGTTWCSAERFPEAETL
YRRFGSMTKVLAQYGVCDYRRASTRITAAIADAGDAARLDLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVET
E

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=245, Percent_Identity=30.2040816326531, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788418, Length=233, Percent_Identity=26.1802575107296, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87082252, Length=221, Percent_Identity=23.0769230769231, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786950, Length=146, Percent_Identity=29.4520547945205, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26270; Mature: 26139

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRHTVRRALAALA
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ERGLVRAERGSGTYVETSRIAYPLRSRTRFSEIVGAGGHEPRGRLLAASREAATKDLARQ
HCCCEEEECCCCCEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHH
LDLAAGAPLIRIEGLRLADRAPICVGTTWCSAERFPEAETLYRRFGSMTKVLAQYGVCDY
HHHHCCCCEEEECCEEECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
RRASTRITAAIADAGDAARLDLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVE
HHHCCEEEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEE
TE
CC
>Mature Secondary Structure 
TTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRHTVRRALAALA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ERGLVRAERGSGTYVETSRIAYPLRSRTRFSEIVGAGGHEPRGRLLAASREAATKDLARQ
HCCCEEEECCCCCEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHH
LDLAAGAPLIRIEGLRLADRAPICVGTTWCSAERFPEAETLYRRFGSMTKVLAQYGVCDY
HHHHCCCCEEEECCEEECCCCCEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
RRASTRITAAIADAGDAARLDLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVE
HHHCCEEEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEEE
TE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]