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The map label for this gene is bphB [H]

Identifier: 86751093

GI number: 86751093

Start: 4551395

End: 4553593

Strand: Reverse

Name: bphB [H]

Synonym: RPB_3985

Alternate gene names: 86751093

Gene position: 4553593-4551395 (Counterclockwise)

Preceding gene: 86751094

Following gene: 86751090

Centisome position: 85.41

GC content: 64.85

Gene sequence:

>2199_bases
GTGACGGCTGAAGCGACGATCTCCCCCGCATTCGGAACCGCCGATCTTTCGAACTGCGAGCAGGAGCAAATTCATCTTGC
CGGTTCGATTCAGCCGCACGGCGCTCTGCTGGTGATCAGCGAGCCGGATCACCGTATCGTTCAAGCCAGCGCCAACGCCG
CCGAGTTCCTCAACGTCGAGCGGGTGCTCGGTCTGCCGCTCGCCGAACTCGAAGGCGATCTGCTGATCCGTATCCTGCCT
CATCTCGACCCGACTTCCGAGGGAACGCCGATCGCCGTGCGCTGCCGGATCGGCAGCCCGGGGGCGGATTTCGACGGCTT
GATCCATCGGCCGCTGGAAGGGGGGCTGATCGTCGAGCTGGAGCGCGCCGGCCCGCCGGTCGATCTGTCGCTGATGGTCG
GGCAGGCGCTGGACAAGATCCGGACCGCGAGCTCGGTTCGCGCCTTGTGCGAAGAAGCTGCGGTGCTGTTCCAGAATCGC
ACCGGCTACGACCGGGTGATGATCTACCGTTTCGACGAAGAGGGCCACGGCGAGGTGTTCTCCGAGCGCCACGTCCCGGG
GCTCGAATCCTATCTCAGCAACCGTTATCCGTCCTCCGACATTCCGCAAATGGCGCGACGCTTGTACGAGCGAATTCGCG
TGCGCGTGCTGGTCGACGTCGGCTACGAGCCGGTGCCCCTGCAGCCGCGGCTGTCACCTCTCACCGGGCGCGACCTCGAC
ATGTCGAGCTGCTTTCTCCGCTCGATGTCGCCGATCCATCTGCAGTATCTGAAGAACATGGGCGTCCGCGCGACGCTGGT
GGTGTCGCTGGTGGTCGGCGGCAAACTGTGGGGACTGGTCGCCTGCCATCACTATCAGCCGCGCTTCATCCATTTCGAGC
TGCGCGCCGTCTGCGAGCTGCTCGCCGAGGCGATCGCCACGCGGATCACCGCACTCGAGAGCTTTGCGCAAAGCCAGTCC
GAACTGTTCGTGCAGCGGCTCGAGCAACGCATGATCGAAGCGATCTCGCGGGAGGGCGACTGGCGCGCGGCGATCTTCGA
CACGACGCAGTCGATCCTGCCGCCGGTCGGTGCGACTGGTGGCGCGCTGGTGTACGAGGGGCAGGTCACCACGATCGGTG
AAGTGCCAGGCACCCAGGATATTCGCGAGGTCGCCGCCTGGCTCAGCCGCCAGCCCCGCGTGTCGGTGATCTCGACATCG
TCGCTCGGTCTCGATGCGCCGGAATTCGCGCCGTTGACGCGCGTCGCGAGCGGCGTCGCGGCGGCGCCGGTCTCCAACCA
TCCGGGCGAATTCCTCATCTGGTTCCGTCCCGAGCGTGTGCGCACGGTGACCTGGGGCGGCGATCCGAAAAAGCCTTTCG
TGATCGGAGATACGCCGGCTGATCTTTCCCCCCGGCGCTCGTTCGCCAAATGGAATCAGGTGGTCGAAGGGACTTCCGAT
CCGTGGACGCCGGCCGACCTGGCAGCGGTGCGGATGATCGGCCAGTCTGTCGCCGACATCGTCTTGCAGTTCCGCGCCGT
ACGAACGCTGATCGCCCAGGAGCAACTCGACCAGTTCTCCCGTCAGGTGCTGACCTCCGACCATCCGGTGGTGATCGCCG
ACATCGAAGGCAAGATCCTGCTGATGAACGACGCGTTCACATCGATGCTGCCGCAGGCGCATCCGCCCGTCCAGCGACTG
GACGATCTCGCCTCGGCCTTCGTCGAACCCTACGATTTCCTGCGGAATGTCGGCGAGCTGATCAGTCGACGGCGCGGCTG
GCGGGGCGAATTGCTGTTGCGCGGCGGGGGAAACGAGCCGCGTCCGTTGATGGTGCGGGCCGACCCGGTGGTCCCGTCGC
GCGATCGCGCGCTCGGCTTCGTGCTGATCTTCACCGACAACACCGACCGCCGCGCTGCTGAAGCGGCGCGTGGCCGTTTC
CAGGAAGGCATCATCAAAAGCAGTCGGGTCGGCAGCGTGCGGTTGGATTCGAAATCCGACCTCGTCTATCAGAATCTGTT
GTCGTCGCTGGTCGAGAACGCCCAGCTCGCGGCGCTGGAGATCACCTATGGGGTCGAGACCGGGCGGATTGCCGAAATGC
TCGAAGGCGTGCGCAATTCGACGCTGCGCACTGCGGAAGTCCTCGAGTATTTGATGCTGCACGCGTCCCGCACCAGCGGG
AACGACAACACGACAAGAAACAACAAGTCCAACAGCTAG

Upstream 100 bases:

>100_bases
TGCCGAACTGCTGGGGTTGAGCCGGCAAAGTCTCTATGCCAAGCTCGCGCGCTATGGGCTCGACGACAAGGGTGCCGTCT
CCCAAAACGCCGAGGACTGA

Downstream 100 bases:

>100_bases
GGATGGGGGCGGCCGGCCTGATCCCATCAAGGCCCGGGCTCCGGATCCGAAGCTGCACTAAGACGGTCGTGGCACCAGGG
TGTCCGCCAAACGCCGTTGG

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 731

Protein sequence:

>732_residues
MTAEATISPAFGTADLSNCEQEQIHLAGSIQPHGALLVISEPDHRIVQASANAAEFLNVERVLGLPLAELEGDLLIRILP
HLDPTSEGTPIAVRCRIGSPGADFDGLIHRPLEGGLIVELERAGPPVDLSLMVGQALDKIRTASSVRALCEEAAVLFQNR
TGYDRVMIYRFDEEGHGEVFSERHVPGLESYLSNRYPSSDIPQMARRLYERIRVRVLVDVGYEPVPLQPRLSPLTGRDLD
MSSCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYQPRFIHFELRAVCELLAEAIATRITALESFAQSQS
ELFVQRLEQRMIEAISREGDWRAAIFDTTQSILPPVGATGGALVYEGQVTTIGEVPGTQDIREVAAWLSRQPRVSVISTS
SLGLDAPEFAPLTRVASGVAAAPVSNHPGEFLIWFRPERVRTVTWGGDPKKPFVIGDTPADLSPRRSFAKWNQVVEGTSD
PWTPADLAAVRMIGQSVADIVLQFRAVRTLIAQEQLDQFSRQVLTSDHPVVIADIEGKILLMNDAFTSMLPQAHPPVQRL
DDLASAFVEPYDFLRNVGELISRRRGWRGELLLRGGGNEPRPLMVRADPVVPSRDRALGFVLIFTDNTDRRAAEAARGRF
QEGIIKSSRVGSVRLDSKSDLVYQNLLSSLVENAQLAALEITYGVETGRIAEMLEGVRNSTLRTAEVLEYLMLHASRTSG
NDNTTRNNKSNS

Sequences:

>Translated_732_residues
MTAEATISPAFGTADLSNCEQEQIHLAGSIQPHGALLVISEPDHRIVQASANAAEFLNVERVLGLPLAELEGDLLIRILP
HLDPTSEGTPIAVRCRIGSPGADFDGLIHRPLEGGLIVELERAGPPVDLSLMVGQALDKIRTASSVRALCEEAAVLFQNR
TGYDRVMIYRFDEEGHGEVFSERHVPGLESYLSNRYPSSDIPQMARRLYERIRVRVLVDVGYEPVPLQPRLSPLTGRDLD
MSSCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYQPRFIHFELRAVCELLAEAIATRITALESFAQSQS
ELFVQRLEQRMIEAISREGDWRAAIFDTTQSILPPVGATGGALVYEGQVTTIGEVPGTQDIREVAAWLSRQPRVSVISTS
SLGLDAPEFAPLTRVASGVAAAPVSNHPGEFLIWFRPERVRTVTWGGDPKKPFVIGDTPADLSPRRSFAKWNQVVEGTSD
PWTPADLAAVRMIGQSVADIVLQFRAVRTLIAQEQLDQFSRQVLTSDHPVVIADIEGKILLMNDAFTSMLPQAHPPVQRL
DDLASAFVEPYDFLRNVGELISRRRGWRGELLLRGGGNEPRPLMVRADPVVPSRDRALGFVLIFTDNTDRRAAEAARGRF
QEGIIKSSRVGSVRLDSKSDLVYQNLLSSLVENAQLAALEITYGVETGRIAEMLEGVRNSTLRTAEVLEYLMLHASRTSG
NDNTTRNNKSNS
>Mature_731_residues
TAEATISPAFGTADLSNCEQEQIHLAGSIQPHGALLVISEPDHRIVQASANAAEFLNVERVLGLPLAELEGDLLIRILPH
LDPTSEGTPIAVRCRIGSPGADFDGLIHRPLEGGLIVELERAGPPVDLSLMVGQALDKIRTASSVRALCEEAAVLFQNRT
GYDRVMIYRFDEEGHGEVFSERHVPGLESYLSNRYPSSDIPQMARRLYERIRVRVLVDVGYEPVPLQPRLSPLTGRDLDM
SSCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYQPRFIHFELRAVCELLAEAIATRITALESFAQSQSE
LFVQRLEQRMIEAISREGDWRAAIFDTTQSILPPVGATGGALVYEGQVTTIGEVPGTQDIREVAAWLSRQPRVSVISTSS
LGLDAPEFAPLTRVASGVAAAPVSNHPGEFLIWFRPERVRTVTWGGDPKKPFVIGDTPADLSPRRSFAKWNQVVEGTSDP
WTPADLAAVRMIGQSVADIVLQFRAVRTLIAQEQLDQFSRQVLTSDHPVVIADIEGKILLMNDAFTSMLPQAHPPVQRLD
DLASAFVEPYDFLRNVGELISRRRGWRGELLLRGGGNEPRPLMVRADPVVPSRDRALGFVLIFTDNTDRRAAEAARGRFQ
EGIIKSSRVGSVRLDSKSDLVYQNLLSSLVENAQLAALEITYGVETGRIAEMLEGVRNSTLRTAEVLEYLMLHASRTSGN
DNTTRNNKSNS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 80596; Mature: 80465

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEATISPAFGTADLSNCEQEQIHLAGSIQPHGALLVISEPDHRIVQASANAAEFLNVE
CCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHH
RVLGLPLAELEGDLLIRILPHLDPTSEGTPIAVRCRIGSPGADFDGLIHRPLEGGLIVEL
HHHCCCHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCEEEEE
ERAGPPVDLSLMVGQALDKIRTASSVRALCEEAAVLFQNRTGYDRVMIYRFDEEGHGEVF
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHH
SERHVPGLESYLSNRYPSSDIPQMARRLYERIRVRVLVDVGYEPVPLQPRLSPLTGRDLD
HHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCC
MSSCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYQPRFIHFELRAVCEL
HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEECCCCEEEEEHHHHHHHH
LAEAIATRITALESFAQSQSELFVQRLEQRMIEAISREGDWRAAIFDTTQSILPPVGATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCC
GALVYEGQVTTIGEVPGTQDIREVAAWLSRQPRVSVISTSSLGLDAPEFAPLTRVASGVA
CEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCE
AAPVSNHPGEFLIWFRPERVRTVTWGGDPKKPFVIGDTPADLSPRRSFAKWNQVVEGTSD
ECCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCC
PWTPADLAAVRMIGQSVADIVLQFRAVRTLIAQEQLDQFSRQVLTSDHPVVIADIEGKIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
LMNDAFTSMLPQAHPPVQRLDDLASAFVEPYDFLRNVGELISRRRGWRGELLLRGGGNEP
EEECHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
RPLMVRADPVVPSRDRALGFVLIFTDNTDRRAAEAARGRFQEGIIKSSRVGSVRLDSKSD
CEEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
LVYQNLLSSLVENAQLAALEITYGVETGRIAEMLEGVRNSTLRTAEVLEYLMLHASRTSG
HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
NDNTTRNNKSNS
CCCCCCCCCCCC
>Mature Secondary Structure 
TAEATISPAFGTADLSNCEQEQIHLAGSIQPHGALLVISEPDHRIVQASANAAEFLNVE
CCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEEECCCCEEEEECCCHHHHHHHH
RVLGLPLAELEGDLLIRILPHLDPTSEGTPIAVRCRIGSPGADFDGLIHRPLEGGLIVEL
HHHCCCHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCEEEEE
ERAGPPVDLSLMVGQALDKIRTASSVRALCEEAAVLFQNRTGYDRVMIYRFDEEGHGEVF
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHH
SERHVPGLESYLSNRYPSSDIPQMARRLYERIRVRVLVDVGYEPVPLQPRLSPLTGRDLD
HHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCC
MSSCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYQPRFIHFELRAVCEL
HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHEEECCCCEEEEEHHHHHHHH
LAEAIATRITALESFAQSQSELFVQRLEQRMIEAISREGDWRAAIFDTTQSILPPVGATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCC
GALVYEGQVTTIGEVPGTQDIREVAAWLSRQPRVSVISTSSLGLDAPEFAPLTRVASGVA
CEEEECCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHCCCE
AAPVSNHPGEFLIWFRPERVRTVTWGGDPKKPFVIGDTPADLSPRRSFAKWNQVVEGTSD
ECCCCCCCCCEEEEECCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCC
PWTPADLAAVRMIGQSVADIVLQFRAVRTLIAQEQLDQFSRQVLTSDHPVVIADIEGKIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEE
LMNDAFTSMLPQAHPPVQRLDDLASAFVEPYDFLRNVGELISRRRGWRGELLLRGGGNEP
EEECHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
RPLMVRADPVVPSRDRALGFVLIFTDNTDRRAAEAARGRFQEGIIKSSRVGSVRLDSKSD
CEEEEECCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCH
LVYQNLLSSLVENAQLAALEITYGVETGRIAEMLEGVRNSTLRTAEVLEYLMLHASRTSG
HHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
NDNTTRNNKSNS
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]