| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is mutA [H]
Identifier: 86750646
GI number: 86750646
Start: 4046874
End: 4048745
Strand: Direct
Name: mutA [H]
Synonym: RPB_3536
Alternate gene names: 86750646
Gene position: 4046874-4048745 (Clockwise)
Preceding gene: 86750645
Following gene: 86750647
Centisome position: 75.9
GC content: 69.66
Gene sequence:
>1872_bases ATGTCGTCTGCAATCAAAGACTTGCCGCTCGCCGCCGAATTCGCTCCGGCCGGCTATGACGACTGGCGCAAGCTCGCCCT CGGCGTGCTGAAGGGCGCGCCGTTCGAAAAACTGCAAGGCAAGACCCCGGACGGCCTCCCGCTCGAACCGATTTATCCGC GTGCGATCAATGCCTTACCGGTCGCCGGCCGGCCCCTCGGGGCGCCCTGGCAGATCGTCCAGCGGGTCGACCATCCCGAC GCGGCCGAAGCCAACAAGCAGGCGCTGCACGATCTCGAAAACGGCGCCACCGGCCTCGCGCTGGTGTTCGCCGGCAGCGT CGGCGGCCGCGGCTTCGGCCTGCCGCCGACCCGGGAGGCGATCGAGAAAGCGTTGCAGGACGTGCATTTGGACGCCGGTA TCGGCATCGAGCTGCAATTCGCCCCGGAATCCTGCGACGTCGTTCGCCACCTCGTCGAGTTGATCAAGCGCCGCGGCACC GACCCGGCCGCCTGCGACATCCGCTTCGGCATCGACCCGATCGGCGCCCGCGCCGTCCGCGGATCGAGCCCCACCGACTG GAGCGAGATCGCGCGCGGCATTGCCGAAGTTGCGAGAAACCTCTGTGCCGCAGGCTTCAAAGGCCCGTTCCTCGCCGCCG ACGGCCGCGTCGTGCACGACGCCGGCGGCTCCGAAGCGCAGGAACTCGCCTACGTCCTCGCCTCCGCCATCGCGTATCTG CGCGCACTGGAAGCCGCCGCCGTGCCGCTCGATCAGGCCCGCGGCATGATTTTCGCGCGCCTCAGTGCCGACGCCGACCA GTTCCTGACGCTGGCGAAATTCCGCGCGCTGCGCGTGCTGTGGGCGCGCATCGAACAGAGCTGCGGCCTCGCGCCGAAGC CGCTGTTCGTCGCCGCCGAAACCGCGTGGCGGATGCTGACGCAACGCGATCCCTCGGTGAACATGCTGCGCGCCACGGTC GCGACCTTCTCGGCCGCGCTCGGCGGCGCCAATGCGCTCGCGGTGCTGCCGCACACGCTGGCGCTCGGCCTGCCCGACGC CTTGGCGCGCCGCATCGCCCGCAACACCCAACTGGTGCTGCTCGAAGAGTCGAACCTCGAAAAAGTCGCCGATCCCGCCG CAGGATCGGGCGGCATCGAGGCGCTGACGCACGAACTCTGTGACGCCGCGTGGACGCAGTTTCAGGCCATCGAGCAGGCC GGCGGCGTGTTCGCCGCGCTCGCCGCCAATCTGATCCAGCCCAAGATCGCAGCGACCCGCGCCGTGCGCGACAAGGCCAT CGCCAAGCGCCGCGACGTGCTGACCGGCGCCAGCGAATTCCCCAACCTGCACGAGGCCCGCGCCACCGTGCTCGACGCCG AGCCGATCGCGGTCCCCACTTTCGGCGAGGCCAAGATCAGCTTCGAACCGCTGACTCCGCTGCGGCTCGCAACGCCGTTC GAAGTGCTGCGCGACAAGTCGGACGCCGTGCTGGCGCGCAAGGCAGCACGGCCGCAAATGTTCCTCGCCAATCTCGGCAC GCCGGCGGATTTCACCGCACGCGCGACGTTTGCGAAGAGCTTCTTCGAGACCGGCGGCATCGAGGCGATCGACACCGAAG GCTTCACCGATCCCGCGGCGCTGGCGGCGGCGTTCAAGGCCTCGGGCGCGGTGTTCGCCTGCCTGTGCTCTTCGGACAAA GCCTATGCGGCTCATGCTGCGGCGGCCGCGCAGGCGCTGCGCGAAGCCGGCTGCGGGCGGATCTATCTCGCCGGCCGCCC CGGCGAGCTGGAAGCGAGCCTGCGCGAGGCCGGCGTACACGACTTCATCTTCGCCGGCGGCGATGCGCTGGCGATGCTGA ACGACGCCTGGCAGCGAATCGAGGCGGCATGA
Upstream 100 bases:
>100_bases TGTCTCGTTCCTTTGGCCCGAAACAACCGTTTGGCAGGACGGTCCGCACGTGGCATTTTCCGGCCAAATCAAATTTTGTA CCGGGAGCCCGATTTCAAAA
Downstream 100 bases:
>100_bases CCGCGACCGGCAAAGCGGTGCTCACCGGCGGCTGCCAGTGCGGCGCGATCCGCTACGCGCTGTCGGCGCCGCCGCTGCGG ATCACCTTGTGCCATTGCCG
Product: methylmalonyl-CoA mutase
Products: NA
Alternate protein names: MCM-beta [H]
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MSSAIKDLPLAAEFAPAGYDDWRKLALGVLKGAPFEKLQGKTPDGLPLEPIYPRAINALPVAGRPLGAPWQIVQRVDHPD AAEANKQALHDLENGATGLALVFAGSVGGRGFGLPPTREAIEKALQDVHLDAGIGIELQFAPESCDVVRHLVELIKRRGT DPAACDIRFGIDPIGARAVRGSSPTDWSEIARGIAEVARNLCAAGFKGPFLAADGRVVHDAGGSEAQELAYVLASAIAYL RALEAAAVPLDQARGMIFARLSADADQFLTLAKFRALRVLWARIEQSCGLAPKPLFVAAETAWRMLTQRDPSVNMLRATV ATFSAALGGANALAVLPHTLALGLPDALARRIARNTQLVLLEESNLEKVADPAAGSGGIEALTHELCDAAWTQFQAIEQA GGVFAALAANLIQPKIAATRAVRDKAIAKRRDVLTGASEFPNLHEARATVLDAEPIAVPTFGEAKISFEPLTPLRLATPF EVLRDKSDAVLARKAARPQMFLANLGTPADFTARATFAKSFFETGGIEAIDTEGFTDPAALAAAFKASGAVFACLCSSDK AYAAHAAAAAQALREAGCGRIYLAGRPGELEASLREAGVHDFIFAGGDALAMLNDAWQRIEAA
Sequences:
>Translated_623_residues MSSAIKDLPLAAEFAPAGYDDWRKLALGVLKGAPFEKLQGKTPDGLPLEPIYPRAINALPVAGRPLGAPWQIVQRVDHPD AAEANKQALHDLENGATGLALVFAGSVGGRGFGLPPTREAIEKALQDVHLDAGIGIELQFAPESCDVVRHLVELIKRRGT DPAACDIRFGIDPIGARAVRGSSPTDWSEIARGIAEVARNLCAAGFKGPFLAADGRVVHDAGGSEAQELAYVLASAIAYL RALEAAAVPLDQARGMIFARLSADADQFLTLAKFRALRVLWARIEQSCGLAPKPLFVAAETAWRMLTQRDPSVNMLRATV ATFSAALGGANALAVLPHTLALGLPDALARRIARNTQLVLLEESNLEKVADPAAGSGGIEALTHELCDAAWTQFQAIEQA GGVFAALAANLIQPKIAATRAVRDKAIAKRRDVLTGASEFPNLHEARATVLDAEPIAVPTFGEAKISFEPLTPLRLATPF EVLRDKSDAVLARKAARPQMFLANLGTPADFTARATFAKSFFETGGIEAIDTEGFTDPAALAAAFKASGAVFACLCSSDK AYAAHAAAAAQALREAGCGRIYLAGRPGELEASLREAGVHDFIFAGGDALAMLNDAWQRIEAA >Mature_622_residues SSAIKDLPLAAEFAPAGYDDWRKLALGVLKGAPFEKLQGKTPDGLPLEPIYPRAINALPVAGRPLGAPWQIVQRVDHPDA AEANKQALHDLENGATGLALVFAGSVGGRGFGLPPTREAIEKALQDVHLDAGIGIELQFAPESCDVVRHLVELIKRRGTD PAACDIRFGIDPIGARAVRGSSPTDWSEIARGIAEVARNLCAAGFKGPFLAADGRVVHDAGGSEAQELAYVLASAIAYLR ALEAAAVPLDQARGMIFARLSADADQFLTLAKFRALRVLWARIEQSCGLAPKPLFVAAETAWRMLTQRDPSVNMLRATVA TFSAALGGANALAVLPHTLALGLPDALARRIARNTQLVLLEESNLEKVADPAAGSGGIEALTHELCDAAWTQFQAIEQAG GVFAALAANLIQPKIAATRAVRDKAIAKRRDVLTGASEFPNLHEARATVLDAEPIAVPTFGEAKISFEPLTPLRLATPFE VLRDKSDAVLARKAARPQMFLANLGTPADFTARATFAKSFFETGGIEAIDTEGFTDPAALAAAFKASGAVFACLCSSDKA YAAHAAAAAQALREAGCGRIYLAGRPGELEASLREAGVHDFIFAGGDALAMLNDAWQRIEAA
Specific function: Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates. This conversion most likely represents an important source of building blocks for polyketide antibiotic biosynthes
COG id: COG1884
COG function: function code I; Methylmalonyl-CoA mutase, N-terminal domain/subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methylmalonyl-CoA mutase family [H]
Homologues:
Organism=Homo sapiens, GI156105689, Length=473, Percent_Identity=26.0042283298097, Blast_Score=122, Evalue=1e-27, Organism=Escherichia coli, GI1789284, Length=475, Percent_Identity=26.3157894736842, Blast_Score=134, Evalue=1e-32, Organism=Caenorhabditis elegans, GI25144500, Length=469, Percent_Identity=24.9466950959488, Blast_Score=127, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016176 - InterPro: IPR014348 - InterPro: IPR006158 - InterPro: IPR006099 - InterPro: IPR004608 [H]
Pfam domain/function: PF01642 MM_CoA_mutase [H]
EC number: =5.4.99.2 [H]
Molecular weight: Translated: 65612; Mature: 65480
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00544 METMALONYL_COA_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSAIKDLPLAAEFAPAGYDDWRKLALGVLKGAPFEKLQGKTPDGLPLEPIYPRAINALP CCCCHHCCCCHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHCCCCC VAGRPLGAPWQIVQRVDHPDAAEANKQALHDLENGATGLALVFAGSVGGRGFGLPPTREA CCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHH IEKALQDVHLDAGIGIELQFAPESCDVVRHLVELIKRRGTDPAACDIRFGIDPIGARAVR HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEC GSSPTDWSEIARGIAEVARNLCAAGFKGPFLAADGRVVHDAGGSEAQELAYVLASAIAYL CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHHH RALEAAAVPLDQARGMIFARLSADADQFLTLAKFRALRVLWARIEQSCGLAPKPLFVAAE HHHHHHHCCHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHH TAWRMLTQRDPSVNMLRATVATFSAALGGANALAVLPHTLALGLPDALARRIARNTQLVL HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEE LEESNLEKVADPAAGSGGIEALTHELCDAAWTQFQAIEQAGGVFAALAANLIQPKIAATR EECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH AVRDKAIAKRRDVLTGASEFPNLHEARATVLDAEPIAVPTFGEAKISFEPLTPLRLATPF HHHHHHHHHHHHHHCCHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECCCCCCHHCCCH EVLRDKSDAVLARKAARPQMFLANLGTPADFTARATFAKSFFETGGIEAIDTEGFTDPAA HHHHCCCHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHH LAAAFKASGAVFACLCSSDKAYAAHAAAAAQALREAGCGRIYLAGRPGELEASLREAGVH HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC DFIFAGGDALAMLNDAWQRIEAA CEEEECCCHHHHHHHHHHHHCCC >Mature Secondary Structure SSAIKDLPLAAEFAPAGYDDWRKLALGVLKGAPFEKLQGKTPDGLPLEPIYPRAINALP CCCHHCCCCHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHCCCCC VAGRPLGAPWQIVQRVDHPDAAEANKQALHDLENGATGLALVFAGSVGGRGFGLPPTREA CCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHH IEKALQDVHLDAGIGIELQFAPESCDVVRHLVELIKRRGTDPAACDIRFGIDPIGARAVR HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEC GSSPTDWSEIARGIAEVARNLCAAGFKGPFLAADGRVVHDAGGSEAQELAYVLASAIAYL CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHHH RALEAAAVPLDQARGMIFARLSADADQFLTLAKFRALRVLWARIEQSCGLAPKPLFVAAE HHHHHHHCCHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHH TAWRMLTQRDPSVNMLRATVATFSAALGGANALAVLPHTLALGLPDALARRIARNTQLVL HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCEEEE LEESNLEKVADPAAGSGGIEALTHELCDAAWTQFQAIEQAGGVFAALAANLIQPKIAATR EECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH AVRDKAIAKRRDVLTGASEFPNLHEARATVLDAEPIAVPTFGEAKISFEPLTPLRLATPF HHHHHHHHHHHHHHCCHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECCCCCCHHCCCH EVLRDKSDAVLARKAARPQMFLANLGTPADFTARATFAKSFFETGGIEAIDTEGFTDPAA HHHHCCCHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHH LAAAFKASGAVFACLCSSDKAYAAHAAAAAQALREAGCGRIYLAGRPGELEASLREAGVH HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCC DFIFAGGDALAMLNDAWQRIEAA CEEEECCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8099072 [H]