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The map label for this gene is yncB [H]

Identifier: 86750303

GI number: 86750303

Start: 3649879

End: 3650904

Strand: Reverse

Name: yncB [H]

Synonym: RPB_3192

Alternate gene names: 86750303

Gene position: 3650904-3649879 (Counterclockwise)

Preceding gene: 86750304

Following gene: 86750302

Centisome position: 68.48

GC content: 66.96

Gene sequence:

>1026_bases
ATGTCCAAGGGTCAGCGTATCGTTCTCGCCTCGCGTCCGACGGGGGAGCCGACGGCGGCGAATTTCCGTCTCGAGGATTA
CGAGGTGCCGGCGCCGGGCGAGGGGCAGGTGCTGCTGCGCACGATCTGGCTGTCGCTCGATCCCTATATGCGCGGCCGCA
TGAGCGACGGGCCGTCCTACGCGCAGCCGGTTCCGGTCGGTGGCGTGATGGAAGGCGGCACCGTGTGCGAAGTGCTCGAT
TCCAAGAGCCCGGGTTTCGCCAAGGGCGACATCGTGCTGGCGCACAGCGGCTGGGCGACCCATGCGGTGGCCGACGCCAA
GCCGCTGCGCAAGATCGATCCGTCGCTCGGACCGATCTCGACCGCTGTGGGCGTGCTCGGCATGCCCGGTATGACCGCCT
ATACGGGCCTTCTGGACATCGGCCAGCCGAAGGCAGGTGAGACCGTCGTGGTCGCTGCGGCGTCGGGCGCGGTCGGCTCC
GCGGTTGGGCAGATCGCCAAGATCAAGGGGGCGCGCGCGGTCGGCATCGCCGGCGGCAAGGTGAAGTGCGACTACGTCAA
GACCGAACTCGGCTTCGACGATTGCCTCGACCATCGCGATCCGGACCTCGCGGCCAAGCTGAAGGCGGCGTGCCCGAACG
GCATCGACGTGTATTTCGAGAATGTCGGCGGCGAGGTGTTCGAGGCGGTGTTTCCGCTGTTCAACGCTTTCGCCCGGATG
CCGGTGTGCGGCCTGATCGCGCAATACAACGCCTTCGAGGCGCCGCCGACGCCGAAATGGGCCACCGCTTTGATGCGCCA
CGTGCTGACCAAGCGGCTCACCATCCGCGGCTTCATCGTCAGCGATTTCGCCGGACGCCGGCAGGAGTTCCTGCGCGACA
TGTCGGAGTGGGTGCGCGACGGCAAGGTGAAGTACAAGGAGTTCGTTACCGAAGGTGTCGAGAGCGCGCCGGAGGCGTTC
ATCGGCCTGCTGAAGGGCGCCAATTTCGGCAAGCAGCTGGTCCGCGTCGGGCCCGACAAGGCCTGA

Upstream 100 bases:

>100_bases
CCCGGAATGACGAAGGAGAGGCTTGCGTCCGATCTGCCGCAGTTGGCGAATGCGGATTGGTCGCCTACAACTCTGCCACC
AACAACAAAAAGGAAACAGC

Downstream 100 bases:

>100_bases
GAATAAACGCGGACCTCGGCTGCTGCCGGGGTCCGCGCCGCTCTAGTCAACAGGAGGTCGCGATGTCGGTCCAGATGGTG
CTGCTGCCGGTCTTCGTGCT

Product: alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSKGQRIVLASRPTGEPTAANFRLEDYEVPAPGEGQVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEGGTVCEVLD
SKSPGFAKGDIVLAHSGWATHAVADAKPLRKIDPSLGPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGS
AVGQIAKIKGARAVGIAGGKVKCDYVKTELGFDDCLDHRDPDLAAKLKAACPNGIDVYFENVGGEVFEAVFPLFNAFARM
PVCGLIAQYNAFEAPPTPKWATALMRHVLTKRLTIRGFIVSDFAGRRQEFLRDMSEWVRDGKVKYKEFVTEGVESAPEAF
IGLLKGANFGKQLVRVGPDKA

Sequences:

>Translated_341_residues
MSKGQRIVLASRPTGEPTAANFRLEDYEVPAPGEGQVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEGGTVCEVLD
SKSPGFAKGDIVLAHSGWATHAVADAKPLRKIDPSLGPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGS
AVGQIAKIKGARAVGIAGGKVKCDYVKTELGFDDCLDHRDPDLAAKLKAACPNGIDVYFENVGGEVFEAVFPLFNAFARM
PVCGLIAQYNAFEAPPTPKWATALMRHVLTKRLTIRGFIVSDFAGRRQEFLRDMSEWVRDGKVKYKEFVTEGVESAPEAF
IGLLKGANFGKQLVRVGPDKA
>Mature_340_residues
SKGQRIVLASRPTGEPTAANFRLEDYEVPAPGEGQVLLRTIWLSLDPYMRGRMSDGPSYAQPVPVGGVMEGGTVCEVLDS
KSPGFAKGDIVLAHSGWATHAVADAKPLRKIDPSLGPISTAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSA
VGQIAKIKGARAVGIAGGKVKCDYVKTELGFDDCLDHRDPDLAAKLKAACPNGIDVYFENVGGEVFEAVFPLFNAFARMP
VCGLIAQYNAFEAPPTPKWATALMRHVLTKRLTIRGFIVSDFAGRRQEFLRDMSEWVRDGKVKYKEFVTEGVESAPEAFI
GLLKGANFGKQLVRVGPDKA

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=340, Percent_Identity=41.1764705882353, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI226059133, Length=340, Percent_Identity=41.1764705882353, Blast_Score=246, Evalue=3e-65,
Organism=Homo sapiens, GI226246682, Length=346, Percent_Identity=37.8612716763006, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI226246680, Length=346, Percent_Identity=37.8612716763006, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI22748929, Length=346, Percent_Identity=37.8612716763006, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI226056130, Length=312, Percent_Identity=39.4230769230769, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI28557745, Length=339, Percent_Identity=27.7286135693215, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI194239674, Length=301, Percent_Identity=28.9036544850498, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI13236495, Length=301, Percent_Identity=28.9036544850498, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI194239676, Length=224, Percent_Identity=31.25, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI226510941, Length=339, Percent_Identity=56.6371681415929, Blast_Score=394, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI133901710, Length=354, Percent_Identity=32.7683615819209, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI133901712, Length=354, Percent_Identity=32.7683615819209, Blast_Score=166, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6323504, Length=373, Percent_Identity=29.7587131367292, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36224; Mature: 36093

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGQRIVLASRPTGEPTAANFRLEDYEVPAPGEGQVLLRTIWLSLDPYMRGRMSDGPSY
CCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHCCHHHHCCCCCCCCC
AQPVPVGGVMEGGTVCEVLDSKSPGFAKGDIVLAHSGWATHAVADAKPLRKIDPSLGPIS
CCCCCCCCEECCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHCCCCCCHHH
TAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSAVGQIAKIKGARAVGIAGGK
HHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCE
VKCDYVKTELGFDDCLDHRDPDLAAKLKAACPNGIDVYFENVGGEVFEAVFPLFNAFARM
EEEEEEHHHCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
PVCGLIAQYNAFEAPPTPKWATALMRHVLTKRLTIRGFIVSDFAGRRQEFLRDMSEWVRD
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHC
GKVKYKEFVTEGVESAPEAFIGLLKGANFGKQLVRVGPDKA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
SKGQRIVLASRPTGEPTAANFRLEDYEVPAPGEGQVLLRTIWLSLDPYMRGRMSDGPSY
CCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHCCHHHHCCCCCCCCC
AQPVPVGGVMEGGTVCEVLDSKSPGFAKGDIVLAHSGWATHAVADAKPLRKIDPSLGPIS
CCCCCCCCEECCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHCCCCCCHHH
TAVGVLGMPGMTAYTGLLDIGQPKAGETVVVAAASGAVGSAVGQIAKIKGARAVGIAGGK
HHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCE
VKCDYVKTELGFDDCLDHRDPDLAAKLKAACPNGIDVYFENVGGEVFEAVFPLFNAFARM
EEEEEEHHHCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
PVCGLIAQYNAFEAPPTPKWATALMRHVLTKRLTIRGFIVSDFAGRRQEFLRDMSEWVRD
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHC
GKVKYKEFVTEGVESAPEAFIGLLKGANFGKQLVRVGPDKA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]