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The map label for this gene is dppB [H]

Identifier: 86750243

GI number: 86750243

Start: 3578541

End: 3579563

Strand: Reverse

Name: dppB [H]

Synonym: RPB_3132

Alternate gene names: 86750243

Gene position: 3579563-3578541 (Counterclockwise)

Preceding gene: 86750244

Following gene: 86750242

Centisome position: 67.14

GC content: 66.37

Gene sequence:

>1023_bases
ATGAGAGCGCTGGCGCTGTCCATCACCGGCAACCGAGGCGTGGCGATCGCGATCGCGATCGTCCAGTGGGTGGCGCGGTT
CGTCGCGGTGGTGCTGGTCATCGCCACCTTCAACTTCGTGCTGGTGCATGCGGCGCCCGGCGATCCCGCGCAGGTGATGG
CCGGGCAGAGCGGGGCGGCCGATGAGGAGATGTTGACCCGGCTCCGTGCCGAGTACGGCCTCGACAAGCCGTATCCCGTG
CAACTCGCGATCTACCTGAAGCGGATCGTGACGCTGGATCTCGGCTACTCCTATCGGCAGCAGCGCTCCGTGCTGTCGCT
GATCGCCGAACGCCTGCCGGCGACGCTGCTGTTGACCTGCTGTGCGTTTCTGCTGTCGCTGTCGGCCGGCGTCTCGCTCG
GCACGTTGGCCGGGGTGCGGGCTGGTAAATGGTCGGACACCGCGCTGACCATCGTGTCGCTGTTCCTCTACGCCATGCCG
GTGTTCTGGCTCGGGTTGATGCTGGTGCTGCTGTTCTCTGTGCAGCTCGATTGGCTGCCGGCGTTCGGCTACGTCACCAT
CGGCGTGCAGATGACGCCGTTCGAACGGGCCCGCGACATCGCCGCGCATCTGGTGCTGCCGGTGGTGTCGCTCGGTGCGG
TGCATCTGGCGATCTACGCGCGGCTGATGCGCTCGGCGGTGATCGATGTGGCGCATCAGGACTTCATCAAGACCGCGCGC
GCCAAGGGGTTGAGGCGCGGCCAGATCATCGTCCACCACATGCTGCGCAACGCCGTGCTGCCGGTGGTCACCGTCGCCGG
CATGCAGGCTGGAACGCTGGTCGGCGGCGCGGTGGTGATCGAGACGGTGTTCGCCTGGCCCGGTCTCGGCCGGCTGACCT
TCGATGCGGTGCTGCAGCGCGACTATCCGCTGATGCTCGGCATCTTCCTGGTGATGTCGGTGATCGTCATCGGGCTCAAT
CTGCTGACCGACGCGATCTACCGGATCGTCGATCCGCGCGTGTCGTTGCGTGCTGCATCCTGA

Upstream 100 bases:

>100_bases
TGCTCGAGATCGACTATCCGAACTTCATGGACAAACGTCTGAAGAACGTGGTGACGACGGCGATCGGCGTGCACGACACG
TTCGGGACGGTTTCGTTCGG

Downstream 100 bases:

>100_bases
GCGGAGGTTGAGATGGATCGGCTGAAGACCTTCCTGAGTCACCCGACCGGCCTGATCGGCCTGGTGATCCTGATCGGCGT
CATCGTGCTCGCGGTCTTGG

Product: binding-protein dependent transport system inner membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRALALSITGNRGVAIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAADEEMLTRLRAEYGLDKPYPV
QLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTCCAFLLSLSAGVSLGTLAGVRAGKWSDTALTIVSLFLYAMP
VFWLGLMLVLLFSVQLDWLPAFGYVTIGVQMTPFERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTAR
AKGLRRGQIIVHHMLRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSVIVIGLN
LLTDAIYRIVDPRVSLRAAS

Sequences:

>Translated_340_residues
MRALALSITGNRGVAIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAADEEMLTRLRAEYGLDKPYPV
QLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTCCAFLLSLSAGVSLGTLAGVRAGKWSDTALTIVSLFLYAMP
VFWLGLMLVLLFSVQLDWLPAFGYVTIGVQMTPFERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTAR
AKGLRRGQIIVHHMLRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSVIVIGLN
LLTDAIYRIVDPRVSLRAAS
>Mature_340_residues
MRALALSITGNRGVAIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAADEEMLTRLRAEYGLDKPYPV
QLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTCCAFLLSLSAGVSLGTLAGVRAGKWSDTALTIVSLFLYAMP
VFWLGLMLVLLFSVQLDWLPAFGYVTIGVQMTPFERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTAR
AKGLRRGQIIVHHMLRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQRDYPLMLGIFLVMSVIVIGLN
LLTDAIYRIVDPRVSLRAAS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=326, Percent_Identity=40.7975460122699, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=35.8064516129032, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=38.3116883116883, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787761, Length=323, Percent_Identity=36.2229102167183, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787497, Length=309, Percent_Identity=31.0679611650485, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=30.9433962264151, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1788504, Length=351, Percent_Identity=28.7749287749288, Blast_Score=137, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36818; Mature: 36818

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALALSITGNRGVAIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAA
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCCCC
DEEMLTRLRAEYGLDKPYPVQLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTC
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
CAFLLSLSAGVSLGTLAGVRAGKWSDTALTIVSLFLYAMPVFWLGLMLVLLFSVQLDWLP
HHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AFGYVTIGVQMTPFERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTAR
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLRRGQIIVHHMLRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQR
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
DYPLMLGIFLVMSVIVIGLNLLTDAIYRIVDPRVSLRAAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MRALALSITGNRGVAIAIAIVQWVARFVAVVLVIATFNFVLVHAAPGDPAQVMAGQSGAA
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHCCCCCCC
DEEMLTRLRAEYGLDKPYPVQLAIYLKRIVTLDLGYSYRQQRSVLSLIAERLPATLLLTC
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
CAFLLSLSAGVSLGTLAGVRAGKWSDTALTIVSLFLYAMPVFWLGLMLVLLFSVQLDWLP
HHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AFGYVTIGVQMTPFERARDIAAHLVLPVVSLGAVHLAIYARLMRSAVIDVAHQDFIKTAR
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGLRRGQIIVHHMLRNAVLPVVTVAGMQAGTLVGGAVVIETVFAWPGLGRLTFDAVLQR
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
DYPLMLGIFLVMSVIVIGLNLLTDAIYRIVDPRVSLRAAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]