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The map label for this gene is secD [H]

Identifier: 86749849

GI number: 86749849

Start: 3115572

End: 3117173

Strand: Reverse

Name: secD [H]

Synonym: RPB_2732

Alternate gene names: 86749849

Gene position: 3117173-3115572 (Counterclockwise)

Preceding gene: 86749850

Following gene: 86749848

Centisome position: 58.47

GC content: 66.42

Gene sequence:

>1602_bases
ATGCTGTATTTCACACGGTGGAAGGCGCTGGCGGTCATTGTGACGGCGCTGGCGGTGTGCCTTTGCGCCGTTCCCAACTT
CTTCCCCGACCACACCGTGAAGACCTGGCCGAAATGGGCGCAGCGCCATCTGGTGCTGGGCCTCGACCTGCAGGGCGGCT
CGCACATCCTGCTCGAGGTCGACGCCAATTCGGTGAGGAAGGACAAGCTCGATTCGGTGCGCGACGATGCGCGCCGGGTG
CTGCGCGAAGCCCGGATCGCCTATACGGGTCTGGCGACGAAGGGCGACCAGGTCGAGGTTCGGATCAGCAAGGAGAACGA
GGTCCCGACCGCGCTCACCAAGCTGCGTGAGCTGTCGCAGCCGCTCGGTGGCTTGCTCGGCAGCAACGGCCAGCGCAGCC
TCGACGTCACCGATGCCGGTGGCGGCTTGATCCGGCTGACCGTGCCGCAGGCGGCGATCGCCGAACGGGTGCGCCAGTCG
GTCGACCAGTCGATCCAGATCGTCGAGCGCCGCGTCAACGAACTCGGCACCGTCGAGCCGCTGATCCAGCGTCAGGGCGC
CGATCGGATTCTCGTCCAGGTGCCCGGTCTGCAGGATCCGACCCGATTGAAGGAACTGCTCGGCAAGACAGCCAAGCTCG
ACTTCCGCATGGTGGATTCCTCGGTGTCGCCCGAACAGGCGCAAGCGGGCCGCGCGCCGTCGGATTCCGATGTGCTGATG
AGTTCGTCGTCGCCGAAGCAGCCTTACGTCATCAAGAAGCAGGTGCTGGTGTCCGGCGCCGATCTCACCGACGCGCAGCC
GGGCTTCGACCAGCGCACCAGCGAGCCGATCGTCAGCTTCCGCTTCAACACCAACGGCGCCCGCAAATTCGCCCGCGCCA
CCACCGAGAATGTCGGCCAACCGTTCGCGATCGTGCTCGACAACGAGGTGATCTCCGCGCCCGTGATCCGTGAGCCGATC
ACCGGCGGCTCCGGCCAGATTTCCGGCAGCTTCACCGTGCAGGGCGCCAACGATCTCGCGATCCTGCTGCGCGCCGGCGC
GCTGCCGGCGCCGCTGACGATCATCGAGGAACGCACCGTCGGCCCCGGCCTCGGCCAGGATTCGATCGAGAAGGGCGAAC
TCGCGGCCTATGTCGGCTCGATCCTCGTCATCATCTTCATGCTGCTGACCTACCGGCTGTTCGGCGTGTTCGCCAACATC
GCGGTGGCCGTCAACGTGGCGATGATCTTCGGCGTGCTGTCGCTGCTCAACGCCACGCTGACGCTGCCCGGCATCGCCGG
CGTGGTGCTCACCGTCGGCATCGCGGTGGACTCCAACGTGCTGATCTACGAGCGCATCCGCGAGGAGCTGCGCGCCGGCC
GCAATGCGATCTCGGCGATCGATGCCGGCTTCAAGCGGGCGCTGTCGACGATTCTCGATTCCAACATCACCACCTTCATC
GCCGCCGCGGTGCTGTTCTACATCGGCACCGGGCCGGTGCGCGGCTTCGCGGTGACGCTCGGCATCGGCATTATCACCAC
CGTGTTCACCGCCTTCACCGTGACCCGGCTGATCGTTGCCACCTGGGTGCGGTGGAAGCGGCCGCAGACCGTGCCGATCT
GA

Upstream 100 bases:

>100_bases
CGACGACAAGGCCGAATCGGCCAAGGACTCGACCAAGGACGACACCGCGTCGAGCTGACGCGGTCGCGGCGCCTTCTCAG
GTTTCTGACGGGACAACTCG

Downstream 100 bases:

>100_bases
CGCCCATCATCCGAAAGAGCTGCAAGTGACATCGACACAGTGGATTTTGATCGGGCTGGGCGCGTTGGTCGTGGCGCTGA
CGATCGTCAGCATCATGGGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLYFTRWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWAQRHLVLGLDLQGGSHILLEVDANSVRKDKLDSVRDDARRV
LREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQPLGGLLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLM
SSSSPKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANI
AVAVNVAMIFGVLSLLNATLTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI

Sequences:

>Translated_533_residues
MLYFTRWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWAQRHLVLGLDLQGGSHILLEVDANSVRKDKLDSVRDDARRV
LREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQPLGGLLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLM
SSSSPKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANI
AVAVNVAMIFGVLSLLNATLTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI
>Mature_533_residues
MLYFTRWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWAQRHLVLGLDLQGGSHILLEVDANSVRKDKLDSVRDDARRV
LREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQPLGGLLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQS
VDQSIQIVERRVNELGTVEPLIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLM
SSSSPKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQPFAIVLDNEVISAPVIREPI
TGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANI
AVAVNVAMIFGVLSLLNATLTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFI
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=525, Percent_Identity=39.0476190476191, Blast_Score=339, Evalue=3e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57403; Mature: 57403

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYFTRWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWAQRHLVLGLDLQGGSHILLEV
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCHHHHHCEEEEEEEECCCCEEEEEE
DANSVRKDKLDSVRDDARRVLREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHHHH
PLGGLLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQSVDQSIQIVERRVNELGTVEP
HHHHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLM
HHHHCCCCEEEEECCCCCCHHHHHHHHCCHHCCEEEEECCCCCCHHHHCCCCCCCCCEEE
SSSSPKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQ
CCCCCCCCEEEHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
PFAIVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTV
CEEEEECCCHHCCCCHHCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEECCCC
GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANIAVAVNVAMIFGVLSLLNATL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFI
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLYFTRWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWAQRHLVLGLDLQGGSHILLEV
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCHHHHHCEEEEEEEECCCCEEEEEE
DANSVRKDKLDSVRDDARRVLREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHHHH
PLGGLLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQSVDQSIQIVERRVNELGTVEP
HHHHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LIQRQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLM
HHHHCCCCEEEEECCCCCCHHHHHHHHCCHHCCEEEEECCCCCCHHHHCCCCCCCCCEEE
SSSSPKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQ
CCCCCCCCEEEHHHHHEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
PFAIVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTV
CEEEEECCCHHCCCCHHCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEECCCC
GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANIAVAVNVAMIFGVLSLLNATL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFI
CCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA