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The map label for this gene is ykvN [H]

Identifier: 86749810

GI number: 86749810

Start: 3077118

End: 3077825

Strand: Reverse

Name: ykvN [H]

Synonym: RPB_2693

Alternate gene names: 86749810

Gene position: 3077825-3077118 (Counterclockwise)

Preceding gene: 86749811

Following gene: 86749809

Centisome position: 57.73

GC content: 58.62

Gene sequence:

>708_bases
ATGCAAGTCGATACTCCGTCCATTTCGGCGCGCGATTGCGGGCTCGACACCACTTTTCAGGTCCTCCGCGGGAAGTGGAA
ACCGTTCATTCTGCATGTCCTTCTGCGCGGCCCCAAGCGGTTCGGTGAATTGAAAAGGGCTGTGCGTCACGCAAGCGAAA
AGGTGCTGACCCAGCAGTTGAGAGAATTGGAGGCGGACGGCCTCGTGAAGCGCACGGACTACAAGGAAGTCCCGCCGCGG
GTCGACTACGCGCTCAGTCCCATCGGCGAAACCCTCGCTCATGCGCTGGAGCCTCTTCGCAAATGGGGCGACGACAACGC
CAGATTATTCGACGGCGTGGTCACCAAGCGTCCGCGGCGCGACAATGCCGATTCCACGTCGAAGCCGGCATTCGACAATC
TCACGACGGCGGTGACCACGATCAACACGCCCATGCCGTTCCGCATCGATGAAAAGACTTTGATCGCCTGCCTGAAAGGC
GAAGTGTCCGACCCGAGATGGCGGGTCTATGTGCAGGCTCTGTTCGACGAGGTGGATGTGTCCGTGATCCACAAGCTCGT
GCTCGATCGATTGGTGACGTTCAACGACTTGTCGAAGGCGATTGATATCTGGCGGGTGAGGGAGTCCGAGAATGAAAGAT
GGGTCAGGGAAATGGCTTCCTTCGAAGTGGCAAGACCTGATGCAGAAAGCCCTGGTCGCGCTCGATAG

Upstream 100 bases:

>100_bases
CCGCCGTTCGTCGGATCAAGCGACCAAGCCAAAGGCCGTCCCGCCAGGTCGGCTATGACTTTCCATTTGACCTATACCAT
ATCTTTTGTAAGTATACAGA

Downstream 100 bases:

>100_bases
CCTGCCCGGCGCACCAGCCATATGGACGTTCGGCGGCGGTACGGCGTTGGCGCAAATCCTGGATCACCGCATCAGCTACG
ACGTGGATATCTTTCTCGAT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRHASEKVLTQQLRELEADGLVKRTDYKEVPPR
VDYALSPIGETLAHALEPLRKWGDDNARLFDGVVTKRPRRDNADSTSKPAFDNLTTAVTTINTPMPFRIDEKTLIACLKG
EVSDPRWRVYVQALFDEVDVSVIHKLVLDRLVTFNDLSKAIDIWRVRESENERWVREMASFEVARPDAESPGRAR

Sequences:

>Translated_235_residues
MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRHASEKVLTQQLRELEADGLVKRTDYKEVPPR
VDYALSPIGETLAHALEPLRKWGDDNARLFDGVVTKRPRRDNADSTSKPAFDNLTTAVTTINTPMPFRIDEKTLIACLKG
EVSDPRWRVYVQALFDEVDVSVIHKLVLDRLVTFNDLSKAIDIWRVRESENERWVREMASFEVARPDAESPGRAR
>Mature_235_residues
MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRHASEKVLTQQLRELEADGLVKRTDYKEVPPR
VDYALSPIGETLAHALEPLRKWGDDNARLFDGVVTKRPRRDNADSTSKPAFDNLTTAVTTINTPMPFRIDEKTLIACLKG
EVSDPRWRVYVQALFDEVDVSVIHKLVLDRLVTFNDLSKAIDIWRVRESENERWVREMASFEVARPDAESPGRAR

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=105, Percent_Identity=34.2857142857143, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 26877; Mature: 26877

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRHASEKVLTQQL
CCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RELEADGLVKRTDYKEVPPRVDYALSPIGETLAHALEPLRKWGDDNARLFDGVVTKRPRR
HHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DNADSTSKPAFDNLTTAVTTINTPMPFRIDEKTLIACLKGEVSDPRWRVYVQALFDEVDV
CCCCCCCCCCHHHHHHHHHCCCCCCCCEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SVIHKLVLDRLVTFNDLSKAIDIWRVRESENERWVREMASFEVARPDAESPGRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRHASEKVLTQQL
CCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
RELEADGLVKRTDYKEVPPRVDYALSPIGETLAHALEPLRKWGDDNARLFDGVVTKRPRR
HHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
DNADSTSKPAFDNLTTAVTTINTPMPFRIDEKTLIACLKGEVSDPRWRVYVQALFDEVDV
CCCCCCCCCCHHHHHHHHHCCCCCCCCEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SVIHKLVLDRLVTFNDLSKAIDIWRVRESENERWVREMASFEVARPDAESPGRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]