| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86749809
Identifier: 86749809
GI number: 86749809
Start: 3076487
End: 3077146
Strand: Reverse
Name: 86749809
Synonym: RPB_2692
Alternate gene names: NA
Gene position: 3077146-3076487 (Counterclockwise)
Preceding gene: 86749810
Following gene: 86749807
Centisome position: 57.71
GC content: 57.73
Gene sequence:
>660_bases ATGCAGAAAGCCCTGGTCGCGCTCGATAGCCTGCCCGGCGCACCAGCCATATGGACGTTCGGCGGCGGTACGGCGTTGGC GCAAATCCTGGATCACCGCATCAGCTACGACGTGGATATCTTTCTCGATTCCAGCACCGCGTTGAAGAATCTGGCCCCGA ACGTGAACCCCGTGACCAAATCGCTGTGCGACACCTGGAATTGGCCTGGCAAGTATCTCAAACTCATCCTTCGTAACGTC GGTGAGATCGATTTCTTGAATGCGCCGTCCTACATCGATCGGCCGACCTACGAACTTCGTTTTGGAGAGCGTATCATCTC TGCCGAGAGAGTGGCCGAGACCGCGACCAAGAAACTGAAGTACCGCGCCTCACAGTACACGCCGCGGGATGCATTTGATT TGGCCGCCATCTATCTGCATGACCGGGAGGCCTTACGCGAGGTTGCGCAATGTCCCGCAATCTCGGACGCCGAGGTGGCC GCGGCACTCAACCGAATGAATCTGGTGAAAGACGACTATCAGGCCGAAATGCGCAACGTGATCAACCCCACGGCTCGTGG CGAGGAATTCATCGACCGGACTTGCGAGATCGCGCTTGAAGCGCTCGTGGAGTTGAGAACGTTGATTCCGCAAAACGAAA CCGGCCATGGGCCACGCTAG
Upstream 100 bases:
>100_bases TTCAACGACTTGTCGAAGGCGATTGATATCTGGCGGGTGAGGGAGTCCGAGAATGAAAGATGGGTCAGGGAAATGGCTTC CTTCGAAGTGGCAAGACCTG
Downstream 100 bases:
>100_bases GCGACTCTGAACCGACCTCGGTGGCGCCCCGAGATCGCAAGTGCTGCGGTACCCCAAGGGCGAGCGGGCAAGGCCGCCGC CTGACAGGCATGGCGCTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MQKALVALDSLPGAPAIWTFGGGTALAQILDHRISYDVDIFLDSSTALKNLAPNVNPVTKSLCDTWNWPGKYLKLILRNV GEIDFLNAPSYIDRPTYELRFGERIISAERVAETATKKLKYRASQYTPRDAFDLAAIYLHDREALREVAQCPAISDAEVA AALNRMNLVKDDYQAEMRNVINPTARGEEFIDRTCEIALEALVELRTLIPQNETGHGPR
Sequences:
>Translated_219_residues MQKALVALDSLPGAPAIWTFGGGTALAQILDHRISYDVDIFLDSSTALKNLAPNVNPVTKSLCDTWNWPGKYLKLILRNV GEIDFLNAPSYIDRPTYELRFGERIISAERVAETATKKLKYRASQYTPRDAFDLAAIYLHDREALREVAQCPAISDAEVA AALNRMNLVKDDYQAEMRNVINPTARGEEFIDRTCEIALEALVELRTLIPQNETGHGPR >Mature_219_residues MQKALVALDSLPGAPAIWTFGGGTALAQILDHRISYDVDIFLDSSTALKNLAPNVNPVTKSLCDTWNWPGKYLKLILRNV GEIDFLNAPSYIDRPTYELRFGERIISAERVAETATKKLKYRASQYTPRDAFDLAAIYLHDREALREVAQCPAISDAEVA AALNRMNLVKDDYQAEMRNVINPTARGEEFIDRTCEIALEALVELRTLIPQNETGHGPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24476; Mature: 24476
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKALVALDSLPGAPAIWTFGGGTALAQILDHRISYDVDIFLDSSTALKNLAPNVNPVTK CCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHHHH SLCDTWNWPGKYLKLILRNVGEIDFLNAPSYIDRPTYELRFGERIISAERVAETATKKLK HHHHCCCCCHHHHHHHHHHCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH YRASQYTPRDAFDLAAIYLHDREALREVAQCPAISDAEVAAALNRMNLVKDDYQAEMRNV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH INPTARGEEFIDRTCEIALEALVELRTLIPQNETGHGPR CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQKALVALDSLPGAPAIWTFGGGTALAQILDHRISYDVDIFLDSSTALKNLAPNVNPVTK CCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCHHHH SLCDTWNWPGKYLKLILRNVGEIDFLNAPSYIDRPTYELRFGERIISAERVAETATKKLK HHHHCCCCCHHHHHHHHHHCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH YRASQYTPRDAFDLAAIYLHDREALREVAQCPAISDAEVAAALNRMNLVKDDYQAEMRNV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH INPTARGEEFIDRTCEIALEALVELRTLIPQNETGHGPR CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA