| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is perM [C]
Identifier: 86749792
GI number: 86749792
Start: 3056323
End: 3057498
Strand: Reverse
Name: perM [C]
Synonym: RPB_2675
Alternate gene names: 86749792
Gene position: 3057498-3056323 (Counterclockwise)
Preceding gene: 86749794
Following gene: 86749786
Centisome position: 57.35
GC content: 67.09
Gene sequence:
>1176_bases GTGACCGTCCCAGTGATCGATCGTTTCCAGGCCCGCAACGACCTCGCCTGGGCGATCGCCATCGGCGGGATCAGTACCGT TGCGTTCGGCGCCCTGCTCTACACCTCCTGGCATTTTGCCGGCACGCTGTTTCTGATCTTCGCCGGCATCCTGTTCGGGG TGTTCCTCAATGCGCTGACCGATCTGGCCGGCAAGGTGGTCGGCGGCCCGCACGGGTTGCGGCTGGCACTGGTTTGCTGC GTGCTCACGGTGATGTTCATCGGCATCGCGGTGCTCGGCGGCAACACCATCGCCCAGCAGGCGACCGCGTTGTCCGGCAC CATCAAGGCGCAGATCGTCAACGCGAAGACCTTCCTCGAGCGGCAGGGCGTCGACACCAGTTTCATGGAACTCAACGTCG TCGCCAATGCCGCCAATTCCGCCAATGCCGGAAGCACCGCCGCCGAGCAGCAGCCGCTGCCGCAGCCACGCAATTTGCCC AGCGCCGGCGACCTCGCCTCCGGCGGCGGCGCGATCGTCAGCCAGACGTTGAAGCTGATCCTCGGCACCATCGGCGCGGT CGGCAACTTCTTCATCGTGATGTTTCTCGGCCTCGCCTTCGCCGCCCAGCCCGACGTCTACCGGCGCGGCCTCGAGCGGG TCGCGCCGCTGCGCTACCGCGCCCAGGCCAGCGCCATCGTCGGGGACACCGGCGATATGCTGAAGCGCTGGCTGCTGGCG CAGCTCATCACCATGTCGGCGGTGTTCGCGGTGACCGCGACCGGCCTGTCGCTGATCGGGATTCCCGGCGCCTTCATCCT CGGCATCCAGGCTGGCCTGCTCGCTTTCATCCCGACCGTCGGCGCCATTCTCGGCGGCCTGGTCATCGTCCTCGCCGCGA TCGGGTCGGGCTGGTTCGCCGTGGTGAGCGCGTTCGTACTGTTTCTCGGCGTTCACGCGCTGGAGAGCTACATCCTGACG CCGCTGATCCAGCGTCAGGCGATCGACATTCCGCCGGCGACACTGTTCGCCATGCAGATCCTGCTCGGCATCGTATTCGG GCTGTGGGGGCTGGCGATGGCGCTGCCGCTGATGGCGATCGGACGAGTCGTGATCAACCATCTTCGCGCGGAGCCGACCC CCGAAATGGTCAGCGCCGCACCGCCGGCGGTGCTGGCCGCTAGCCCGGAATCGTGA
Upstream 100 bases:
>100_bases TCCGGGTGTCCCAAAAATGACGCCGGCGATCTCGCGTGGCCCGCTTGCGTCGCGCGCAATTTGAAGAAATGCTCAGCCGC CCCTTCATAGGAATTGCCCC
Downstream 100 bases:
>100_bases CGACCGTATCGGTGTGCTCGACCTCGGGCGGCGAGGCGAAGAATCCACTGACCAGGCCGCGCCACTCGGTGAAATTCTCG GAGCCGCGGAAGTCGACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MTVPVIDRFQARNDLAWAIAIGGISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALTDLAGKVVGGPHGLRLALVCC VLTVMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLERQGVDTSFMELNVVANAANSANAGSTAAEQQPLPQPRNLP SAGDLASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLA QLITMSAVFAVTATGLSLIGIPGAFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFAVVSAFVLFLGVHALESYILT PLIQRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGRVVINHLRAEPTPEMVSAAPPAVLAASPES
Sequences:
>Translated_391_residues MTVPVIDRFQARNDLAWAIAIGGISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALTDLAGKVVGGPHGLRLALVCC VLTVMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLERQGVDTSFMELNVVANAANSANAGSTAAEQQPLPQPRNLP SAGDLASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLA QLITMSAVFAVTATGLSLIGIPGAFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFAVVSAFVLFLGVHALESYILT PLIQRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGRVVINHLRAEPTPEMVSAAPPAVLAASPES >Mature_390_residues TVPVIDRFQARNDLAWAIAIGGISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALTDLAGKVVGGPHGLRLALVCCV LTVMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLERQGVDTSFMELNVVANAANSANAGSTAAEQQPLPQPRNLPS AGDLASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLAQ LITMSAVFAVTATGLSLIGIPGAFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFAVVSAFVLFLGVHALESYILTP LIQRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGRVVINHLRAEPTPEMVSAAPPAVLAASPES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40509; Mature: 40377
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPVIDRFQARNDLAWAIAIGGISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALT CCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLAGKVVGGPHGLRLALVCCVLTVMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEHHHHHHH RQGVDTSFMELNVVANAANSANAGSTAAEQQPLPQPRNLPSAGDLASGGGAIVSQTLKLI HCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LGTIGAVGNFFIVMFLGLAFAAQPDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH QLITMSAVFAVTATGLSLIGIPGAFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFA HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VVSAFVLFLGVHALESYILTPLIQRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRVVINHLRAEPTPEMVSAAPPAVLAASPES HHHHHHHHCCCCCHHHHHCCCCCEEECCCCC >Mature Secondary Structure TVPVIDRFQARNDLAWAIAIGGISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALT CCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLAGKVVGGPHGLRLALVCCVLTVMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLE HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEHHHHHHH RQGVDTSFMELNVVANAANSANAGSTAAEQQPLPQPRNLPSAGDLASGGGAIVSQTLKLI HCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LGTIGAVGNFFIVMFLGLAFAAQPDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHH QLITMSAVFAVTATGLSLIGIPGAFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFA HHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VVSAFVLFLGVHALESYILTPLIQRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRVVINHLRAEPTPEMVSAAPPAVLAASPES HHHHHHHHCCCCCHHHHHCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA