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The map label for this gene is ybiX [C]

Identifier: 86749210

GI number: 86749210

Start: 2375650

End: 2376339

Strand: Direct

Name: ybiX [C]

Synonym: RPB_2089

Alternate gene names: 86749210

Gene position: 2375650-2376339 (Clockwise)

Preceding gene: 86749209

Following gene: 86749211

Centisome position: 44.56

GC content: 63.04

Gene sequence:

>690_bases
ATGCTGGTTTGCATTCCCGATGTGTTGTCCAGGCATGAGGTGGCGGAGTTCCGCCACGTCATGGATGCCGCGGATTGGGA
AGACGGCCGTTCCACCGCCGGCGCGCAGTCGGCCATGGTCAAGCGCAACGAGCAGCTTCCGCCCGACGGCGAGCTCGCCC
GTGCGCTCGGCCGTCGCATCATCCAGGCGCTGACCGCCAATCCGAAATTCGTTTCGGCGGCGGTGCCGCTGCAGATCTTC
CCGCCGCTGTTCAACCGCTATGCCGCGGCGGGCAATCATCATTTCGGCATTCACGTCGACAACGCGGTGCGCGGCGATCC
GCTCACCGGGCTGCGGATCCGTACCGATCTGTCGGTGACGTTGTTCCTCTCCGAGCCGGACGAATACGACGGCGGCGAAC
TGGTGATCGAAGACACCTACGGCTCGCACGAGATCAAGCTGCCGGCGGGAGATTGCGTGCTGTATCCGTCGACCAGCCTG
CACATGGTCACGCCGGTCACGCGCGGTGCGCGGGTCGCGTCTTTTTTCTGGCTGCAGAGCATGATACGAGATGCCCATGC
GCGCAGCATGATCTACGACCTCGACGGGGCCATTCAGGCTCTCGTCGAGCGGCTGGGACGAGATGACCCTGAAACGGTCA
AATTGACCGGTATCTATCACAACCTCATCCGCTACTGGGCCGAAGTATGA

Upstream 100 bases:

>100_bases
TATCGCAGCAACTCGCCGTTCGTGTTCATCGCGCCGGGCCGTTCGGTCTGGCTCAGTTTGCGCGCCGCGCTCTGACACGC
GCGTCGCCACCGGAGCTGCC

Downstream 100 bases:

>100_bases
AACTGTCGAAAATTCGATCGATCACCGTCGCATTGGTTGCCGCGATCATGCTCGCGCCGATGGCGTCGGTGTTTGCGCAG
CCGGCGCCCGCGCAACCGTC

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLVCIPDVLSRHEVAEFRHVMDAADWEDGRSTAGAQSAMVKRNEQLPPDGELARALGRRIIQALTANPKFVSAAVPLQIF
PPLFNRYAAAGNHHFGIHVDNAVRGDPLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDTYGSHEIKLPAGDCVLYPSTSL
HMVTPVTRGARVASFFWLQSMIRDAHARSMIYDLDGAIQALVERLGRDDPETVKLTGIYHNLIRYWAEV

Sequences:

>Translated_229_residues
MLVCIPDVLSRHEVAEFRHVMDAADWEDGRSTAGAQSAMVKRNEQLPPDGELARALGRRIIQALTANPKFVSAAVPLQIF
PPLFNRYAAAGNHHFGIHVDNAVRGDPLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDTYGSHEIKLPAGDCVLYPSTSL
HMVTPVTRGARVASFFWLQSMIRDAHARSMIYDLDGAIQALVERLGRDDPETVKLTGIYHNLIRYWAEV
>Mature_229_residues
MLVCIPDVLSRHEVAEFRHVMDAADWEDGRSTAGAQSAMVKRNEQLPPDGELARALGRRIIQALTANPKFVSAAVPLQIF
PPLFNRYAAAGNHHFGIHVDNAVRGDPLTGLRIRTDLSVTLFLSEPDEYDGGELVIEDTYGSHEIKLPAGDCVLYPSTSL
HMVTPVTRGARVASFFWLQSMIRDAHARSMIYDLDGAIQALVERLGRDDPETVKLTGIYHNLIRYWAEV

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=229, Percent_Identity=52.8384279475983, Blast_Score=244, Evalue=3e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2089_RHOP2 (Q2IYB5)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_485706.1
- ProteinModelPortal:   Q2IYB5
- SMR:   Q2IYB5
- STRING:   Q2IYB5
- GeneID:   3908503
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_2089
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   NLIRYWA
- ProtClustDB:   PRK05467
- BioCyc:   RPAL316058:RPB_2089-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25433; Mature: 25433

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 171-171

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVCIPDVLSRHEVAEFRHVMDAADWEDGRSTAGAQSAMVKRNEQLPPDGELARALGRRI
CEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
IQALTANPKFVSAAVPLQIFPPLFNRYAAAGNHHFGIHVDNAVRGDPLTGLRIRTDLSVT
HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCEEE
LFLSEPDEYDGGELVIEDTYGSHEIKLPAGDCVLYPSTSLHMVTPVTRGARVASFFWLQS
EEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHHH
MIRDAHARSMIYDLDGAIQALVERLGRDDPETVKLTGIYHNLIRYWAEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVCIPDVLSRHEVAEFRHVMDAADWEDGRSTAGAQSAMVKRNEQLPPDGELARALGRRI
CEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
IQALTANPKFVSAAVPLQIFPPLFNRYAAAGNHHFGIHVDNAVRGDPLTGLRIRTDLSVT
HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCEEE
LFLSEPDEYDGGELVIEDTYGSHEIKLPAGDCVLYPSTSLHMVTPVTRGARVASFFWLQS
EEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEECCCCEEEECCCCCCHHHHHHHHHHH
MIRDAHARSMIYDLDGAIQALVERLGRDDPETVKLTGIYHNLIRYWAEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA