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The map label for this gene is bfrD [H]

Identifier: 86749209

GI number: 86749209

Start: 2373243

End: 2375624

Strand: Direct

Name: bfrD [H]

Synonym: RPB_2088

Alternate gene names: 86749209

Gene position: 2373243-2375624 (Clockwise)

Preceding gene: 86749208

Following gene: 86749210

Centisome position: 44.51

GC content: 65.74

Gene sequence:

>2382_bases
ATGAATGGGGCAAAGGCGCCGAGATCGTTGCGCGCGGAAGCATCGATCCGGACTTTCAACGACGAACTCGACAATCACTA
CGGCCGCAAAGTGTCGGCCGTCGCCGGCATGATCGCGGTGGCGTCGATCGGCGGCGCCGAGGCGCAACAATCCAGCCTTC
CGGCGGTCACCGTCGACGCCCCGGTGGCGCGACCGCGTCCGGCGGCGAAGCCGACGCCCGACCAGGTCCGTGCCCGCACC
GCGCTGCGTCGCGCGGCGCGGCGGGCTCAGCCGGCTCAGGTGGCGCCGGTACCGTTCCCGAATGCCGGCGCGCTGTCGGC
GGATCGCAACCCCTATGCCGACGCGGATGCGCCCTACAAGGTCGACCGGCTGTCGGGCACCAAGTTCACCGAGCCGCTGC
TGAACACGCCGCGCACCGTGACCGTGCTGAGCAAAGAGATCCTGGAAGACAAGAACGCCACCTCGCTGCGCGACATCGCG
CGCTCCACCGCCGGCGTCACGCTCGGTACCGGGGAGGGCGGCAACGCCTTCGGCGACCGCTTCTTCATCCGCGGCTTCGA
TGCCCGCAACGACGTGTTCATCGACGGCATCCGCGATCCCGCGATCTCGATCCGCGAGAATTTCTTCACCGAGCAGGTCG
AGATCCTGCGCGGCCCGGCCTCGACCATGGCCGGCCGCGGCACCGCCGGCGGCGCCATCAACATCGTCACCAAGCAGGCC
ACCACCGCCGGCAATTTCACCAAGGCCGAGACCACCTTCGGCACCGACGCCACCAAGCGCGTCACCGTCGACGTCAACCA
GGTGATCAGCCCGACGCTCGCGGTGCGGTTCGACGGCCTGTATCAGAAGGCCAATGTCGCCGGGCGCAACTACGTCTATG
ACGACCGCTGGGGCACGCTCGCCGCGGTGAAGTGGACGCCGACCGACGCCGTCAAGGTCACCGCCAACTACGTCCACACC
GATCTCGACGGCCTGCCGGATTTCGGCGTGCCCTACAACACCACGCTGCGGAAGCCTTCGACCAGCGTCAACGTTCCGCG
CGACACCTATTACGGCTTCATCAATCGCGACTTCCAGAAGGCGCAGCAGGATTTCGGCACCGTGATCGGCGAGTTCGCCA
TCACCCCCGATCTGACGCTGAGCAATCGTTCGCGCGCCGGCCGTTCGGTGCTCGACTACATCGGCACACTGCCGAGCAAT
CCGACCGCGACCACCGTGCAGCTCGCCTCGCAGAGTCGCTATCAGGTCACCAACGTGCTCGCCAACCAGACCGACCTGAC
CTACAAATTCGACACCGGTCCGGTGAAACACGCGCTGATCGGCGGCGCCGAAATCTCGCGCGAGAGCGTGATGCGCGACA
CCTATGCGGGGCTGACCTCGGAACTGACCGGGTTCCAGACCGGCGGCCGCATCACCGTGCCGCTGCTGTCGCCGCCGAAC
GAGTTCGAGTTCGCCAGCACGCCGCAGCGCGCCTACAACCCGACCTTCATCACCGTCGACACCAAGTCCGCTTACCTGAT
CGAAACCGCGAACTGGAACGATTTCGTCATCCTCAACGGCGGGGTGCGCTACGATGACTACAGCATCACCGGCCACACCG
CGAGCACATCGACCGGCGTGCAGTCCGGGATGTGGAACTACAATGTCGGCGGCGTGGTCAAGCCGCTGCCTTACGCCAGC
CTCTACGCCGCCTACGCCACCTCGAGCAATCCGGTCGGCGCCGAACTCGACGCTTCGGGCACCGCCTATGGCGGCCTCGT
GGTCAACAACACCACCTTCCAGGCGCTGTCGCCCGAATTGAACAAGGCGGCGGAGGTCGGCACCAAATGGGAACTGTTCG
ATCGGCACCTGCTGGTGACCGGGGCGCTGTTCCAGACCGAGAAATCGAACGCGCGCGAGACCCAGGGCAGCACCATCCTG
TCCACCGGCGTCTATCGCGTGCGCGGCATCGACCTCGGCGTCTCCGGCAAGCTGACCGAGCGCTGGAGCGTGTTCGGCGG
TCTGGTGCTGATGGAGAGCGAGGTGCTGCAATCGATCGATCCGACCCAGGTCGGCGCCAAGCTCGCCAACATCGCGCACC
AGTCGTTCAACGTGCTCACCAAATATCGCATCGGCGAGCAGTGGGAGGTCGGCGGGCAGGCGACCTACGCCTCGAAGATC
TACGGCGGCACCTTCGGCGCCATCAACGGCAACGTGCTGCCGGAGCATTGGCGGTTCGACAGCTTCGTCGAATTCAAGGT
CGACAAGCACCTGACCGCCAAGCTGTCGGTCAACAACATCTTCAACACGACCTATTACGACGCGTTCTATCGCAGCAACT
CGCCGTTCGTGTTCATCGCGCCGGGCCGTTCGGTCTGGCTCAGTTTGCGCGCCGCGCTCTGA

Upstream 100 bases:

>100_bases
TGCGACAAAGGCGCGCGCAAGTTGACCCTCAAAATGGCGGCCGATACCACGGGAAGCTGCAGGTAATTAGCAACTGCACT
TTTCGGGGGCGATGGGCGAT

Downstream 100 bases:

>100_bases
CACGCGCGTCGCCACCGGAGCTGCCATGCTGGTTTGCATTCCCGATGTGTTGTCCAGGCATGAGGTGGCGGAGTTCCGCC
ACGTCATGGATGCCGCGGAT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 793; Mature: 793

Protein sequence:

>793_residues
MNGAKAPRSLRAEASIRTFNDELDNHYGRKVSAVAGMIAVASIGGAEAQQSSLPAVTVDAPVARPRPAAKPTPDQVRART
ALRRAARRAQPAQVAPVPFPNAGALSADRNPYADADAPYKVDRLSGTKFTEPLLNTPRTVTVLSKEILEDKNATSLRDIA
RSTAGVTLGTGEGGNAFGDRFFIRGFDARNDVFIDGIRDPAISIRENFFTEQVEILRGPASTMAGRGTAGGAINIVTKQA
TTAGNFTKAETTFGTDATKRVTVDVNQVISPTLAVRFDGLYQKANVAGRNYVYDDRWGTLAAVKWTPTDAVKVTANYVHT
DLDGLPDFGVPYNTTLRKPSTSVNVPRDTYYGFINRDFQKAQQDFGTVIGEFAITPDLTLSNRSRAGRSVLDYIGTLPSN
PTATTVQLASQSRYQVTNVLANQTDLTYKFDTGPVKHALIGGAEISRESVMRDTYAGLTSELTGFQTGGRITVPLLSPPN
EFEFASTPQRAYNPTFITVDTKSAYLIETANWNDFVILNGGVRYDDYSITGHTASTSTGVQSGMWNYNVGGVVKPLPYAS
LYAAYATSSNPVGAELDASGTAYGGLVVNNTTFQALSPELNKAAEVGTKWELFDRHLLVTGALFQTEKSNARETQGSTIL
STGVYRVRGIDLGVSGKLTERWSVFGGLVLMESEVLQSIDPTQVGAKLANIAHQSFNVLTKYRIGEQWEVGGQATYASKI
YGGTFGAINGNVLPEHWRFDSFVEFKVDKHLTAKLSVNNIFNTTYYDAFYRSNSPFVFIAPGRSVWLSLRAAL

Sequences:

>Translated_793_residues
MNGAKAPRSLRAEASIRTFNDELDNHYGRKVSAVAGMIAVASIGGAEAQQSSLPAVTVDAPVARPRPAAKPTPDQVRART
ALRRAARRAQPAQVAPVPFPNAGALSADRNPYADADAPYKVDRLSGTKFTEPLLNTPRTVTVLSKEILEDKNATSLRDIA
RSTAGVTLGTGEGGNAFGDRFFIRGFDARNDVFIDGIRDPAISIRENFFTEQVEILRGPASTMAGRGTAGGAINIVTKQA
TTAGNFTKAETTFGTDATKRVTVDVNQVISPTLAVRFDGLYQKANVAGRNYVYDDRWGTLAAVKWTPTDAVKVTANYVHT
DLDGLPDFGVPYNTTLRKPSTSVNVPRDTYYGFINRDFQKAQQDFGTVIGEFAITPDLTLSNRSRAGRSVLDYIGTLPSN
PTATTVQLASQSRYQVTNVLANQTDLTYKFDTGPVKHALIGGAEISRESVMRDTYAGLTSELTGFQTGGRITVPLLSPPN
EFEFASTPQRAYNPTFITVDTKSAYLIETANWNDFVILNGGVRYDDYSITGHTASTSTGVQSGMWNYNVGGVVKPLPYAS
LYAAYATSSNPVGAELDASGTAYGGLVVNNTTFQALSPELNKAAEVGTKWELFDRHLLVTGALFQTEKSNARETQGSTIL
STGVYRVRGIDLGVSGKLTERWSVFGGLVLMESEVLQSIDPTQVGAKLANIAHQSFNVLTKYRIGEQWEVGGQATYASKI
YGGTFGAINGNVLPEHWRFDSFVEFKVDKHLTAKLSVNNIFNTTYYDAFYRSNSPFVFIAPGRSVWLSLRAAL
>Mature_793_residues
MNGAKAPRSLRAEASIRTFNDELDNHYGRKVSAVAGMIAVASIGGAEAQQSSLPAVTVDAPVARPRPAAKPTPDQVRART
ALRRAARRAQPAQVAPVPFPNAGALSADRNPYADADAPYKVDRLSGTKFTEPLLNTPRTVTVLSKEILEDKNATSLRDIA
RSTAGVTLGTGEGGNAFGDRFFIRGFDARNDVFIDGIRDPAISIRENFFTEQVEILRGPASTMAGRGTAGGAINIVTKQA
TTAGNFTKAETTFGTDATKRVTVDVNQVISPTLAVRFDGLYQKANVAGRNYVYDDRWGTLAAVKWTPTDAVKVTANYVHT
DLDGLPDFGVPYNTTLRKPSTSVNVPRDTYYGFINRDFQKAQQDFGTVIGEFAITPDLTLSNRSRAGRSVLDYIGTLPSN
PTATTVQLASQSRYQVTNVLANQTDLTYKFDTGPVKHALIGGAEISRESVMRDTYAGLTSELTGFQTGGRITVPLLSPPN
EFEFASTPQRAYNPTFITVDTKSAYLIETANWNDFVILNGGVRYDDYSITGHTASTSTGVQSGMWNYNVGGVVKPLPYAS
LYAAYATSSNPVGAELDASGTAYGGLVVNNTTFQALSPELNKAAEVGTKWELFDRHLLVTGALFQTEKSNARETQGSTIL
STGVYRVRGIDLGVSGKLTERWSVFGGLVLMESEVLQSIDPTQVGAKLANIAHQSFNVLTKYRIGEQWEVGGQATYASKI
YGGTFGAINGNVLPEHWRFDSFVEFKVDKHLTAKLSVNNIFNTTYYDAFYRSNSPFVFIAPGRSVWLSLRAAL

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=727, Percent_Identity=28.748280605227, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI1786344, Length=713, Percent_Identity=22.7208976157083, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 85796; Mature: 85796

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGAKAPRSLRAEASIRTFNDELDNHYGRKVSAVAGMIAVASIGGAEAQQSSLPAVTVDA
CCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCEEEECC
PVARPRPAAKPTPDQVRARTALRRAARRAQPAQVAPVPFPNAGALSADRNPYADADAPYK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VDRLSGTKFTEPLLNTPRTVTVLSKEILEDKNATSLRDIARSTAGVTLGTGEGGNAFGDR
EECCCCCCCCHHHHCCCCEEEHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCE
FFIRGFDARNDVFIDGIRDPAISIRENFFTEQVEILRGPASTMAGRGTAGGAINIVTKQA
EEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECC
TTAGNFTKAETTFGTDATKRVTVDVNQVISPTLAVRFDGLYQKANVAGRNYVYDDRWGTL
CCCCCCEECCEECCCCCCEEEEEEHHHHHCCEEEEEECCHHHHCCCCCCCCEEECCCCEE
AAVKWTPTDAVKVTANYVHTDLDGLPDFGVPYNTTLRKPSTSVNVPRDTYYGFINRDFQK
EEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHH
AQQDFGTVIGEFAITPDLTLSNRSRAGRSVLDYIGTLPSNPTATTVQLASQSRYQVTNVL
HHHHHHHHHHHEEECCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
ANQTDLTYKFDTGPVKHALIGGAEISRESVMRDTYAGLTSELTGFQTGGRITVPLLSPPN
CCCCCEEEEECCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
EFEFASTPQRAYNPTFITVDTKSAYLIETANWNDFVILNGGVRYDDYSITGHTASTSTGV
CCCCCCCCCHHCCCEEEEEECCCEEEEEECCCCEEEEECCCEEECCEEEECCCCCCCCCH
QSGMWNYNVGGVVKPLPYASLYAAYATSSNPVGAELDASGTAYGGLVVNNTTFQALSPEL
HCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCEECCEEEECCCHHHCCCCH
NKAAEVGTKWELFDRHLLVTGALFQTEKSNARETQGSTILSTGVYRVRGIDLGVSGKLTE
HHHHHCCCCHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCHH
RWSVFGGLVLMESEVLQSIDPTQVGAKLANIAHQSFNVLTKYRIGEQWEVGGQATYASKI
HHHHHHCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCEEEHHHC
YGGTFGAINGNVLPEHWRFDSFVEFKVDKHLTAKLSVNNIFNTTYYDAFYRSNSPFVFIA
CCCEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEECCCEEEHEEECCCCEEEEE
PGRSVWLSLRAAL
CCCEEEEEEEECC
>Mature Secondary Structure
MNGAKAPRSLRAEASIRTFNDELDNHYGRKVSAVAGMIAVASIGGAEAQQSSLPAVTVDA
CCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCEEEECC
PVARPRPAAKPTPDQVRARTALRRAARRAQPAQVAPVPFPNAGALSADRNPYADADAPYK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
VDRLSGTKFTEPLLNTPRTVTVLSKEILEDKNATSLRDIARSTAGVTLGTGEGGNAFGDR
EECCCCCCCCHHHHCCCCEEEHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCE
FFIRGFDARNDVFIDGIRDPAISIRENFFTEQVEILRGPASTMAGRGTAGGAINIVTKQA
EEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECC
TTAGNFTKAETTFGTDATKRVTVDVNQVISPTLAVRFDGLYQKANVAGRNYVYDDRWGTL
CCCCCCEECCEECCCCCCEEEEEEHHHHHCCEEEEEECCHHHHCCCCCCCCEEECCCCEE
AAVKWTPTDAVKVTANYVHTDLDGLPDFGVPYNTTLRKPSTSVNVPRDTYYGFINRDFQK
EEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHH
AQQDFGTVIGEFAITPDLTLSNRSRAGRSVLDYIGTLPSNPTATTVQLASQSRYQVTNVL
HHHHHHHHHHHEEECCCCEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
ANQTDLTYKFDTGPVKHALIGGAEISRESVMRDTYAGLTSELTGFQTGGRITVPLLSPPN
CCCCCEEEEECCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
EFEFASTPQRAYNPTFITVDTKSAYLIETANWNDFVILNGGVRYDDYSITGHTASTSTGV
CCCCCCCCCHHCCCEEEEEECCCEEEEEECCCCEEEEECCCEEECCEEEECCCCCCCCCH
QSGMWNYNVGGVVKPLPYASLYAAYATSSNPVGAELDASGTAYGGLVVNNTTFQALSPEL
HCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCEECCEEEECCCHHHCCCCH
NKAAEVGTKWELFDRHLLVTGALFQTEKSNARETQGSTILSTGVYRVRGIDLGVSGKLTE
HHHHHCCCCHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEECCEEEEEEEEECCCCCCHH
RWSVFGGLVLMESEVLQSIDPTQVGAKLANIAHQSFNVLTKYRIGEQWEVGGQATYASKI
HHHHHHCEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCEEEHHHC
YGGTFGAINGNVLPEHWRFDSFVEFKVDKHLTAKLSVNNIFNTTYYDAFYRSNSPFVFIA
CCCEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEECCCEEEHEEECCCCEEEEE
PGRSVWLSLRAAL
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]