| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ycjS [C]
Identifier: 86749187
GI number: 86749187
Start: 2348018
End: 2349094
Strand: Direct
Name: ycjS [C]
Synonym: RPB_2066
Alternate gene names: 86749187
Gene position: 2348018-2349094 (Clockwise)
Preceding gene: 86749186
Following gene: 86749188
Centisome position: 44.04
GC content: 71.59
Gene sequence:
>1077_bases ATGACGGCGCCGCTGCGGCAGGAACCGCTGCGGCTCGGCCTGTGCGGCTGCGGCTGGGTGATCCGGCATTGCTATCAGCC GGCGCTGGCGGAGCTTTCGGCGCTGTTCGAGGTCGTGGCGGTCTTCGATCCCGATCCGGCCGCGCTGCAGCGGGCCGCAC ATGCGTGGCCGGCGGCGCGGCGCTGCGATTCGTTCGAGGAGTTGCTCGCCGCGCATCCGGATGCGGCGGTGATCGCCTCG CCGAACGCCTGTCATCTCGACCACGCAACCGCATTGCTCGCCGCCGGCATCTCGTGCCTGGTCGAGAAGCCGGTGGTGCG CGACACGGCCGACGCCGCGCTGCTGCAGGCTGCGGCGCAGAGCGGCGCGGCGCTGGTCAGCGGCGTCGCCTGCCGCTTTC GCGATGATACACGACTGTGGCTCGATCAGGTCGCGTTGCTCGGTCCGCTCACCGAACTCGATCTGGTCTGGAGTCGCGAG CACGGCGTGCCGTCGGCGCCGTGGCATCTGCGCCGCGCGGACGGCTGGACCGGCGTGTTCGCCGATCTCGGCTATCATCT GCTGGACCTCGCCGGCGCGGCGCTGCGCTGGCGCGCCGAACGCATCGACGTCGCCATGGTGCAACGCGCGTCACAGCGTC GTGGCGCGGGCGCCTCCTGGTATGTCGAGGGCAGCAAGGTCCGTGCCGGGTCGCTGGCCTACGACACCGACGATCGCTTC GGCGCCACGCTGGCGGTCGACGGCTGCCGGATCGGCCTGCGCGTCGCCTGGATCGACAGCGCGCGCGGCGATCTGGTGCG GCTCGAGGCGCGCGGTGCGCGGGGCGAAGCCGTGCTCAGCGGGCTGTTCGGATTTTCCGACAACCGCCGTGAGCGCGATC AGCAAGTGGTGCTGCGGCTGCACGGCCGCGACAAGATCCGTACCACATTCGAAACCGGGCCCGAGTTGCAACTTTGCGCC TTCGCGACCCTGCTGCGACATTTTCATCGCTGCGTCCGCGCCGGCGCGGACGAGGAAGCCGCCGCGCTGCGGTTCGCCGC CGCGCTCGGCGGCGCCTTGCGGGAGGCGGCGGCATGA
Upstream 100 bases:
>100_bases TCACGGATCGCGCCGGCGTTATCGAGGTCGCAACGCCCGGCGAGGTCACCGACCTCGTCGTCGCGCTGGCGCAGGAGGCC CGCCGGCTGGAGCCGGCGCG
Downstream 100 bases:
>100_bases GCGCGATCTTCGCCGTCGATCTAGGGGCCACCTGGCTGCGCACCGCGCGGGTCGCGCCGGACGGGCGATGGATCGACCGC AAGGCGCGGGTGCCGACGCC
Product: oxidoreductase-like
Products: NA
Alternate protein names: Oxidoreductase; Oxidoreductase Domain Protein; Oxidoreductase Protein; Oxidoreductase-Like; Oxidoreductase RifL; Oxidoreductase-Like Protein
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MTAPLRQEPLRLGLCGCGWVIRHCYQPALAELSALFEVVAVFDPDPAALQRAAHAWPAARRCDSFEELLAAHPDAAVIAS PNACHLDHATALLAAGISCLVEKPVVRDTADAALLQAAAQSGAALVSGVACRFRDDTRLWLDQVALLGPLTELDLVWSRE HGVPSAPWHLRRADGWTGVFADLGYHLLDLAGAALRWRAERIDVAMVQRASQRRGAGASWYVEGSKVRAGSLAYDTDDRF GATLAVDGCRIGLRVAWIDSARGDLVRLEARGARGEAVLSGLFGFSDNRRERDQQVVLRLHGRDKIRTTFETGPELQLCA FATLLRHFHRCVRAGADEEAAALRFAAALGGALREAAA
Sequences:
>Translated_358_residues MTAPLRQEPLRLGLCGCGWVIRHCYQPALAELSALFEVVAVFDPDPAALQRAAHAWPAARRCDSFEELLAAHPDAAVIAS PNACHLDHATALLAAGISCLVEKPVVRDTADAALLQAAAQSGAALVSGVACRFRDDTRLWLDQVALLGPLTELDLVWSRE HGVPSAPWHLRRADGWTGVFADLGYHLLDLAGAALRWRAERIDVAMVQRASQRRGAGASWYVEGSKVRAGSLAYDTDDRF GATLAVDGCRIGLRVAWIDSARGDLVRLEARGARGEAVLSGLFGFSDNRRERDQQVVLRLHGRDKIRTTFETGPELQLCA FATLLRHFHRCVRAGADEEAAALRFAAALGGALREAAA >Mature_357_residues TAPLRQEPLRLGLCGCGWVIRHCYQPALAELSALFEVVAVFDPDPAALQRAAHAWPAARRCDSFEELLAAHPDAAVIASP NACHLDHATALLAAGISCLVEKPVVRDTADAALLQAAAQSGAALVSGVACRFRDDTRLWLDQVALLGPLTELDLVWSREH GVPSAPWHLRRADGWTGVFADLGYHLLDLAGAALRWRAERIDVAMVQRASQRRGAGASWYVEGSKVRAGSLAYDTDDRFG ATLAVDGCRIGLRVAWIDSARGDLVRLEARGARGEAVLSGLFGFSDNRRERDQQVVLRLHGRDKIRTTFETGPELQLCAF ATLLRHFHRCVRAGADEEAAALRFAAALGGALREAAA
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.-.-.- [C]
Molecular weight: Translated: 38677; Mature: 38546
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPLRQEPLRLGLCGCGWVIRHCYQPALAELSALFEVVAVFDPDPAALQRAAHAWPAAR CCCCCCCCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH RCDSFEELLAAHPDAAVIASPNACHLDHATALLAAGISCLVEKPVVRDTADAALLQAAAQ HCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SGAALVSGVACRFRDDTRLWLDQVALLGPLTELDLVWSREHGVPSAPWHLRRADGWTGVF CCHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCEEEECCCCCHHH ADLGYHLLDLAGAALRWRAERIDVAMVQRASQRRGAGASWYVEGSKVRAGSLAYDTDDRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCEEECCCCCC GATLAVDGCRIGLRVAWIDSARGDLVRLEARGARGEAVLSGLFGFSDNRRERDQQVVLRL CCEEEECCEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHEE HGRDKIRTTFETGPELQLCAFATLLRHFHRCVRAGADEEAAALRFAAALGGALREAAA CCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAPLRQEPLRLGLCGCGWVIRHCYQPALAELSALFEVVAVFDPDPAALQRAAHAWPAAR CCCCCCCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH RCDSFEELLAAHPDAAVIASPNACHLDHATALLAAGISCLVEKPVVRDTADAALLQAAAQ HCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SGAALVSGVACRFRDDTRLWLDQVALLGPLTELDLVWSREHGVPSAPWHLRRADGWTGVF CCHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCEEEECCCCCHHH ADLGYHLLDLAGAALRWRAERIDVAMVQRASQRRGAGASWYVEGSKVRAGSLAYDTDDRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCEEECCCCCC GATLAVDGCRIGLRVAWIDSARGDLVRLEARGARGEAVLSGLFGFSDNRRERDQQVVLRL CCEEEECCEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHEE HGRDKIRTTFETGPELQLCAFATLLRHFHRCVRAGADEEAAALRFAAALGGALREAAA CCCCCEEEHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA