Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

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The map label for this gene is yejA [C]

Identifier: 86748893

GI number: 86748893

Start: 2028551

End: 2030458

Strand: Direct

Name: yejA [C]

Synonym: RPB_1770

Alternate gene names: 86748893

Gene position: 2028551-2030458 (Clockwise)

Preceding gene: 86748892

Following gene: 86748894

Centisome position: 38.05

GC content: 65.25

Gene sequence:

>1908_bases
GTGAAGCTGACCCGACGACACCTTCTGCAAGCCGGCGTAGCGGCCGCGGCCACCCCGGCTTTCGGTTTAGGCTCCGGCCT
CCTGACCGGCGCGCCGGCGTTGGCCGAGGGCGCGGTCGACAAGCCGACATCCGGACTGACTTGGCGGCACGGCCTGTCGC
TGTTCGGCGAGGTCAAATACCCGGCCGGCTTCAAGCGGTTCGACTACGTCAACCCGGATGCGCCGAAGGGCGGCGCGGCG
CGGCAGATCTCGCTCGGCACCTTCGACAGTTTCAATCTCGCGGTCGCCGGCGTGAAGGGCAACATCGCTCCGGCGGTGGG
CTATCTGTACGAGACGCTGATGACCCAGTCGCAGGACGAGGTCGGCACCTCCTACGGCCTGCTCGCCGAGAGCGCGGCGC
ATCCCGAGGACTATTCCTGGGTGGTGTATCGGCTGCGCGCCGATTCGCGCTGGCACGACGGCAGACCGGTGACCGCCGAC
GACGTGGTGTTCTCGTTCGACTCCCTGAAGAAGTTCAGCCCGCGCTACGCCTCGTATTACAGCCACGTCACCAAGGCCGA
GAAGGCCGGCGAGCGCGAGATCCGCTTCACGTTCGATGGGCCCGGCAACCGCGAATTGCCGACCATCGTCGGCGAACTGA
TGATCCTGCCGAAACACTGGTGGGAAGGCACCGACGAGCAGGGCCGCAAGCGCGACATCTCCGCCACCACGCTGGAGAAG
CCGCTCGGCTCCGGCCCCTACCGGATCAAGGACTTCGTCGCCGGCCGCTCGATCGTGCTGGAGCGCGTCAAGGATTACTG
GGGCGCGAAGCTGCCGGTGCGCGTCGGCCAGTACAATTTCGACGAACTGCGTTTCGAATTCTTCCGCGACAACACCGTGG
CCCTCGAAGCGTTCAAGGCCGATCAGGCCGACTGGATCGCCGAGAACTCCGCCAAGCAATGGGCGACGGCCTACGATTTC
CCCGCGGTCACCGACAAGCGGGTGGTCCGGGAGGAGTTTCCGATCAACGATTCCGGCCGGATGCAGGCCTTCGTGCTCAA
TCTGCGCCGCGACATGTTCAAGGACGCCCGGATCCGGCGCGCCTTCAACTACGCGTTCGACTTCGAGGAAATGAACAAGC
AGCTGTTCTACGGTCAGTACAAGCGGATCAACAGCTACTTCGAAGGCACCGAGCTCGCCTCCAGCGGGCTGCCGCAGGGC
GACGAACTCGCGATCCTCGACACCGTGCGCGACAAGGTGCCTGCCGAATTGTTCACGAAGGCCTACACCAATCCGGTCGG
CGGCAATCCGGAAGCGGTTCGCGCCAATCTGCGCGAGGCGATGAAGCTGGTGAAGGAAGCCGGCTTCGACTTCAAGGACC
GCAAGCTGGTCGATCCCTCCGGCAAGCCGGTGACGGTCGAGATATTGGTGCAGGACCCCTCGTCGGAGCGGATCTCGCTG
TTCTACAGGCCGTCGCTGGAGCGGCTCGGCGTCACCGTGTCGATCCGCGTCGTCGACGATGCGCAGTATCAGAACCGCAT
CCGCGCCTTCGACTTCGACGTCATCACCGATCTGTGGGGCCAGTCGCTGTCGCCCGGCAACGAGCAGCGCGATTATTGGG
GCTCGGCGGCGGCCGATCAGCAAGGCTCGCGCAACACCATCGGCATCAAGAATCCCGCGGTCGACGCGCTGATCGACAAG
GTGATCTTCGCCAAGGACCGCGCCACGCTGGTGGCGGCGACACGCGCGCTCGACCGCGTGCTGCTGTGGAATTTCTACGT
CGTGCCGCAATTCACCTACGGCTTCTCGCGCTACGCGCGCTGGGACCGTTTCAGCCGCGCCGAGTTGCCGAAATACGCCC
GCTCCGGCCTGCCGGCGCTGTGGTGGTACGACGAAGCCAAGGCCGCCAAGATCGGCCGACGCTCTTGA

Upstream 100 bases:

>100_bases
TGTCCAAATCTTAAGAACCAAGTCCTGAAAACATGTGCTGAAATCAGGCCCTGAGACCAGCACCATCGTCCCAGTCCGAC
GCCAACAGGAATTCCAGACC

Downstream 100 bases:

>100_bases
GGACAGGCTCGCGTATGGCGCAGCTCAACCGCCGCGAAGTTCTCGTCCTCGGCGTCGGCGCCCTGGCGGCGGCCCGGATC
AGCCCCGCATCCGCGGCCGA

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MKLTRRHLLQAGVAAAATPAFGLGSGLLTGAPALAEGAVDKPTSGLTWRHGLSLFGEVKYPAGFKRFDYVNPDAPKGGAA
RQISLGTFDSFNLAVAGVKGNIAPAVGYLYETLMTQSQDEVGTSYGLLAESAAHPEDYSWVVYRLRADSRWHDGRPVTAD
DVVFSFDSLKKFSPRYASYYSHVTKAEKAGEREIRFTFDGPGNRELPTIVGELMILPKHWWEGTDEQGRKRDISATTLEK
PLGSGPYRIKDFVAGRSIVLERVKDYWGAKLPVRVGQYNFDELRFEFFRDNTVALEAFKADQADWIAENSAKQWATAYDF
PAVTDKRVVREEFPINDSGRMQAFVLNLRRDMFKDARIRRAFNYAFDFEEMNKQLFYGQYKRINSYFEGTELASSGLPQG
DELAILDTVRDKVPAELFTKAYTNPVGGNPEAVRANLREAMKLVKEAGFDFKDRKLVDPSGKPVTVEILVQDPSSERISL
FYRPSLERLGVTVSIRVVDDAQYQNRIRAFDFDVITDLWGQSLSPGNEQRDYWGSAAADQQGSRNTIGIKNPAVDALIDK
VIFAKDRATLVAATRALDRVLLWNFYVVPQFTYGFSRYARWDRFSRAELPKYARSGLPALWWYDEAKAAKIGRRS

Sequences:

>Translated_635_residues
MKLTRRHLLQAGVAAAATPAFGLGSGLLTGAPALAEGAVDKPTSGLTWRHGLSLFGEVKYPAGFKRFDYVNPDAPKGGAA
RQISLGTFDSFNLAVAGVKGNIAPAVGYLYETLMTQSQDEVGTSYGLLAESAAHPEDYSWVVYRLRADSRWHDGRPVTAD
DVVFSFDSLKKFSPRYASYYSHVTKAEKAGEREIRFTFDGPGNRELPTIVGELMILPKHWWEGTDEQGRKRDISATTLEK
PLGSGPYRIKDFVAGRSIVLERVKDYWGAKLPVRVGQYNFDELRFEFFRDNTVALEAFKADQADWIAENSAKQWATAYDF
PAVTDKRVVREEFPINDSGRMQAFVLNLRRDMFKDARIRRAFNYAFDFEEMNKQLFYGQYKRINSYFEGTELASSGLPQG
DELAILDTVRDKVPAELFTKAYTNPVGGNPEAVRANLREAMKLVKEAGFDFKDRKLVDPSGKPVTVEILVQDPSSERISL
FYRPSLERLGVTVSIRVVDDAQYQNRIRAFDFDVITDLWGQSLSPGNEQRDYWGSAAADQQGSRNTIGIKNPAVDALIDK
VIFAKDRATLVAATRALDRVLLWNFYVVPQFTYGFSRYARWDRFSRAELPKYARSGLPALWWYDEAKAAKIGRRS
>Mature_635_residues
MKLTRRHLLQAGVAAAATPAFGLGSGLLTGAPALAEGAVDKPTSGLTWRHGLSLFGEVKYPAGFKRFDYVNPDAPKGGAA
RQISLGTFDSFNLAVAGVKGNIAPAVGYLYETLMTQSQDEVGTSYGLLAESAAHPEDYSWVVYRLRADSRWHDGRPVTAD
DVVFSFDSLKKFSPRYASYYSHVTKAEKAGEREIRFTFDGPGNRELPTIVGELMILPKHWWEGTDEQGRKRDISATTLEK
PLGSGPYRIKDFVAGRSIVLERVKDYWGAKLPVRVGQYNFDELRFEFFRDNTVALEAFKADQADWIAENSAKQWATAYDF
PAVTDKRVVREEFPINDSGRMQAFVLNLRRDMFKDARIRRAFNYAFDFEEMNKQLFYGQYKRINSYFEGTELASSGLPQG
DELAILDTVRDKVPAELFTKAYTNPVGGNPEAVRANLREAMKLVKEAGFDFKDRKLVDPSGKPVTVEILVQDPSSERISL
FYRPSLERLGVTVSIRVVDDAQYQNRIRAFDFDVITDLWGQSLSPGNEQRDYWGSAAADQQGSRNTIGIKNPAVDALIDK
VIFAKDRATLVAATRALDRVLLWNFYVVPQFTYGFSRYARWDRFSRAELPKYARSGLPALWWYDEAKAAKIGRRS

Specific function: Possible binding-protein with either a transport or enzymatic activity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=585, Percent_Identity=37.0940170940171, Blast_Score=387, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 71469; Mature: 71469

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTRRHLLQAGVAAAATPAFGLGSGLLTGAPALAEGAVDKPTSGLTWRHGLSLFGEVKY
CCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCCCCCCCCCHHHCCCHHEEECC
PAGFKRFDYVNPDAPKGGAARQISLGTFDSFNLAVAGVKGNIAPAVGYLYETLMTQSQDE
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHH
VGTSYGLLAESAAHPEDYSWVVYRLRADSRWHDGRPVTADDVVFSFDSLKKFSPRYASYY
HCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHEEEHHHHHHCCCHHHHHH
SHVTKAEKAGEREIRFTFDGPGNRELPTIVGELMILPKHWWEGTDEQGRKRDISATTLEK
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHEECHHHCCCCCCCCCCCCCCHHHHHC
PLGSGPYRIKDFVAGRSIVLERVKDYWGAKLPVRVGQYNFDELRFEFFRDNTVALEAFKA
CCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCEEEEEEECC
DQADWIAENSAKQWATAYDFPAVTDKRVVREEFPINDSGRMQAFVLNLRRDMFKDARIRR
CCCHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AFNYAFDFEEMNKQLFYGQYKRINSYFEGTELASSGLPQGDELAILDTVRDKVPAELFTK
HHHHEECHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEHHHHHHCCHHHHHH
AYTNPVGGNPEAVRANLREAMKLVKEAGFDFKDRKLVDPSGKPVTVEILVQDPSSERISL
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEEEECCCCCEEEE
FYRPSLERLGVTVSIRVVDDAQYQNRIRAFDFDVITDLWGQSLSPGNEQRDYWGSAAADQ
EECCCHHHCCEEEEEEEECCCHHHCHHHHCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCC
QGSRNTIGIKNPAVDALIDKVIFAKDRATLVAATRALDRVLLWNFYVVPQFTYGFSRYAR
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHH
WDRFSRAELPKYARSGLPALWWYDEAKAAKIGRRS
HHCCCHHHCCHHHHCCCCEEEEECCHHHHHCCCCC
>Mature Secondary Structure
MKLTRRHLLQAGVAAAATPAFGLGSGLLTGAPALAEGAVDKPTSGLTWRHGLSLFGEVKY
CCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCCCCCCCCCCCHHHCCCHHEEECC
PAGFKRFDYVNPDAPKGGAARQISLGTFDSFNLAVAGVKGNIAPAVGYLYETLMTQSQDE
CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHH
VGTSYGLLAESAAHPEDYSWVVYRLRADSRWHDGRPVTADDVVFSFDSLKKFSPRYASYY
HCCHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHEEEHHHHHHCCCHHHHHH
SHVTKAEKAGEREIRFTFDGPGNRELPTIVGELMILPKHWWEGTDEQGRKRDISATTLEK
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHEECHHHCCCCCCCCCCCCCCHHHHHC
PLGSGPYRIKDFVAGRSIVLERVKDYWGAKLPVRVGQYNFDELRFEFFRDNTVALEAFKA
CCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCEEEEEEECC
DQADWIAENSAKQWATAYDFPAVTDKRVVREEFPINDSGRMQAFVLNLRRDMFKDARIRR
CCCHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AFNYAFDFEEMNKQLFYGQYKRINSYFEGTELASSGLPQGDELAILDTVRDKVPAELFTK
HHHHEECHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEHHHHHHCCHHHHHH
AYTNPVGGNPEAVRANLREAMKLVKEAGFDFKDRKLVDPSGKPVTVEILVQDPSSERISL
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEEEECCCCCEEEE
FYRPSLERLGVTVSIRVVDDAQYQNRIRAFDFDVITDLWGQSLSPGNEQRDYWGSAAADQ
EECCCHHHCCEEEEEEEECCCHHHCHHHHCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCC
QGSRNTIGIKNPAVDALIDKVIFAKDRATLVAATRALDRVLLWNFYVVPQFTYGFSRYAR
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHH
WDRFSRAELPKYARSGLPALWWYDEAKAAKIGRRS
HHCCCHHHCCHHHHCCCCEEEEECCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]