Click here to switch to the map view.

The map label for this gene is cycM [H]

Identifier: 86748892

GI number: 86748892

Start: 2027697

End: 2028248

Strand: Direct

Name: cycM [H]

Synonym: RPB_1769

Alternate gene names: 86748892

Gene position: 2027697-2028248 (Clockwise)

Preceding gene: 86748889

Following gene: 86748893

Centisome position: 38.03

GC content: 63.59

Gene sequence:

>552_bases
ATGGATTCTTTCGAGCTCAACAAGATTCTCGGCGCGGTCCTTGCGACCTGTCTCGTGCTGCTGCTGTCGAATTTCGCCGC
GCAGGCGATCTTTGCGCCGGACAAGGTGGAAAAGCAGGGCTGGGCCATCGCCGTGAAGGAAGCCGAGCCGGCCCCTGGCA
AGGATGCCGCGCCCGCCGCCGCCCCCGAGCCGATCGAAAATCTGCTGCAGACCGCCTCGGTCGAGAAGGGCGTCTCCGCC
GCCAAGAAATGCGCCGCCTGCCATACCTTCGAGAAGGACGGTCCGAACCGCGTCGGCCCCAATCTTTACGGCATCGTCGG
CGAGAAGAAGGGCGAGGGGCGCGGCTTCAATTTCTCGGCGGCGATGAAGGCCAAGGGCGGCGAATGGACGTTCGACGACC
TCAACAAGTTCCTCGCCAGCCCGAAGGGCTACATCCCGGGCACCGCGATGGGCTTTGCCGGGATTTCGAACGACAAGGAA
CGGGCGGATCTGATCGCCTATCTCAACAAGAATTCCGACACGCCCGAGGCGATCCCGACCGCCGCCAAATAG

Upstream 100 bases:

>100_bases
AGAGCATGGGCAAACCGTTATCTCATCACAACTAAAGTCTATTTGAGAATGACAACAATAAACAATCCAGACTCGGTCTG
ACAGGAAACGCGAGCGAACC

Downstream 100 bases:

>100_bases
CGGTCCGGCGCCAGCGCCATCGACGATCTCGAACGGCCGGGTCTTCCCGGCCGTTTTTGCGTGCGCCGATCATTCGCCAT
CACGCTGTGCTGATCGGGAC

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAAAPEPIENLLQTASVEKGVSA
AKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSAAMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKE
RADLIAYLNKNSDTPEAIPTAAK

Sequences:

>Translated_183_residues
MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAAAPEPIENLLQTASVEKGVSA
AKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSAAMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKE
RADLIAYLNKNSDTPEAIPTAAK
>Mature_183_residues
MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAAAPEPIENLLQTASVEKGVSA
AKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSAAMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKE
RADLIAYLNKNSDTPEAIPTAAK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=49.5145631067961, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=44.4444444444444, Blast_Score=86, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17566554, Length=87, Percent_Identity=43.6781609195402, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320796, Length=100, Percent_Identity=45, Blast_Score=101, Evalue=7e-23,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=42.7184466019417, Blast_Score=98, Evalue=9e-22,
Organism=Drosophila melanogaster, GI17137228, Length=96, Percent_Identity=52.0833333333333, Blast_Score=101, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17137204, Length=91, Percent_Identity=50.5494505494505, Blast_Score=97, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19199; Mature: 19199

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCCCCCCCCCC
APEPIENLLQTASVEKGVSAAKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
AMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKERADLIAYLNKNSDTPEAIPT
HEECCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
AAK
CCC
>Mature Secondary Structure
MDSFELNKILGAVLATCLVLLLSNFAAQAIFAPDKVEKQGWAIAVKEAEPAPGKDAAPAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCCCCCCCCCC
APEPIENLLQTASVEKGVSAAKKCAACHTFEKDGPNRVGPNLYGIVGEKKGEGRGFNFSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
AMKAKGGEWTFDDLNKFLASPKGYIPGTAMGFAGISNDKERADLIAYLNKNSDTPEAIPT
HEECCCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
AAK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]