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The map label for this gene is degT [H]

Identifier: 86748733

GI number: 86748733

Start: 1813288

End: 1814439

Strand: Direct

Name: degT [H]

Synonym: RPB_1609

Alternate gene names: 86748733

Gene position: 1813288-1814439 (Clockwise)

Preceding gene: 86748732

Following gene: 86748734

Centisome position: 34.01

GC content: 66.23

Gene sequence:

>1152_bases
ATGAACCAGCATCTTCGTACCGATCCCGTGCCTTTCGTCGACATCGGCGCCCAGCGCCGCCGGATCGGCCAGTCCATCGA
CGATGCCGTCGGTCGCGTGCTGGCGCACTGCCAGTTCATCGGCGGACCGGAAGTCGCGGAGTTCGAGGCCAAGCTCGCGG
CCTATACCGGCGCCAAGCACGTCATCGGCTGCGCCAACGGCACCGATGCGCTGCTGATGGTGTTGATGGCCAAGGGCGTC
GGCCCTGGCGATGCGGTGTTCTGCCCGTCCTTCACCTTCTGCGCCACGGTCTCGCCGGCAGCGCGCACGGGCGCGACGCC
GATCCTGGTCGACGTCGACGAAGCCACGTTCACCATCGACATCGCCTCGTTGAAGCGTGCCATCGTCACAGCCAAAAAGC
TCGGCCTCAGGCCGAAGGCGGTCATCCCCGTCGATCTGTTCGGCCAACCCGCGGACCACGCCGCGATCGCCGCGATCGCC
GAGGCCGAGGGCCTGTTCGTGCTCGACGATGCGGCGCAAAGCATGGGCGCCAGGTACAAAGGCAAGCGCCTCGGCACTTT
CGGCGCGGCGACGACGACCAGCTTCTTTCCTGCGAAGCCGCTCGGTTGCTATGGCGATGGCGGCGCGATCTTCACGGACG
ACGACCAGCTCGCCGCCGATCTGCGCAGCATCCGCGTGCACGGCCAGGGCTCCGATAAATACGACAATATCCGCCTCGGC
CTGACCGGTCGGCTCGATACCATCCAGGCCGCGGTGCTGCTCGAGAAGCTGAAGATTTTCGAGGACGAGATCGTCGCCCG
CAACAAGGTGGCGGAACGCTATGCGCAAAGCCTCGGCAACATCGTGACCGTGCCGCGCGTTGCCGATGGCAATACGTCGA
TCTGGGCCTGCTACACCATCCGGCTGCCCAGGGGCACGGACCGCGACGCCTTCGCGGCAACGCTGAAGGCGCAAGGCGTG
CCGACCGCAGTCTACTACGGCAAATCCGTGCACATGCAGTCCGCTTACGGCATGTTCCCGGTGGCCGAGGGTGGCCTGCC
GGTGTGTGAGGCGCTCTCTGCGGACGTCATCAGCCTGCCGGTTCACGCCTATCTGGACGAGGCCACCCAGGATCGCGTCA
TCGCGGCCGTGCGAAGCGCGGTGGCAAGCTAA

Upstream 100 bases:

>100_bases
GGGCGGCCGTAAAGAGCCGCTGCGCGCCGCCGGCTAGGCGCCGCCCACTCATCGCGCGCCGCCAGGCGCATTGTCGTTCC
GATTCATCAAGCCGAGTGCC

Downstream 100 bases:

>100_bases
AGCACCGTCATTCCGGGGCGCTCGCGAAAGCGAGCGAACCCGGAATCTGAAACCCGCACAATCGCGGGATTCCGGGTTCG
CGCCTTCGGCGCGCCCCGGA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNQHLRTDPVPFVDIGAQRRRIGQSIDDAVGRVLAHCQFIGGPEVAEFEAKLAAYTGAKHVIGCANGTDALLMVLMAKGV
GPGDAVFCPSFTFCATVSPAARTGATPILVDVDEATFTIDIASLKRAIVTAKKLGLRPKAVIPVDLFGQPADHAAIAAIA
EAEGLFVLDDAAQSMGARYKGKRLGTFGAATTTSFFPAKPLGCYGDGGAIFTDDDQLAADLRSIRVHGQGSDKYDNIRLG
LTGRLDTIQAAVLLEKLKIFEDEIVARNKVAERYAQSLGNIVTVPRVADGNTSIWACYTIRLPRGTDRDAFAATLKAQGV
PTAVYYGKSVHMQSAYGMFPVAEGGLPVCEALSADVISLPVHAYLDEATQDRVIAAVRSAVAS

Sequences:

>Translated_383_residues
MNQHLRTDPVPFVDIGAQRRRIGQSIDDAVGRVLAHCQFIGGPEVAEFEAKLAAYTGAKHVIGCANGTDALLMVLMAKGV
GPGDAVFCPSFTFCATVSPAARTGATPILVDVDEATFTIDIASLKRAIVTAKKLGLRPKAVIPVDLFGQPADHAAIAAIA
EAEGLFVLDDAAQSMGARYKGKRLGTFGAATTTSFFPAKPLGCYGDGGAIFTDDDQLAADLRSIRVHGQGSDKYDNIRLG
LTGRLDTIQAAVLLEKLKIFEDEIVARNKVAERYAQSLGNIVTVPRVADGNTSIWACYTIRLPRGTDRDAFAATLKAQGV
PTAVYYGKSVHMQSAYGMFPVAEGGLPVCEALSADVISLPVHAYLDEATQDRVIAAVRSAVAS
>Mature_383_residues
MNQHLRTDPVPFVDIGAQRRRIGQSIDDAVGRVLAHCQFIGGPEVAEFEAKLAAYTGAKHVIGCANGTDALLMVLMAKGV
GPGDAVFCPSFTFCATVSPAARTGATPILVDVDEATFTIDIASLKRAIVTAKKLGLRPKAVIPVDLFGQPADHAAIAAIA
EAEGLFVLDDAAQSMGARYKGKRLGTFGAATTTSFFPAKPLGCYGDGGAIFTDDDQLAADLRSIRVHGQGSDKYDNIRLG
LTGRLDTIQAAVLLEKLKIFEDEIVARNKVAERYAQSLGNIVTVPRVADGNTSIWACYTIRLPRGTDRDAFAATLKAQGV
PTAVYYGKSVHMQSAYGMFPVAEGGLPVCEALSADVISLPVHAYLDEATQDRVIAAVRSAVAS

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=368, Percent_Identity=33.4239130434783, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI2367285, Length=334, Percent_Identity=28.1437125748503, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40426; Mature: 40426

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQHLRTDPVPFVDIGAQRRRIGQSIDDAVGRVLAHCQFIGGPEVAEFEAKLAAYTGAKH
CCCCCCCCCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
VIGCANGTDALLMVLMAKGVGPGDAVFCPSFTFCATVSPAARTGATPILVDVDEATFTID
EEEECCCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCHHHCCCCEEEEEECCCEEEEE
IASLKRAIVTAKKLGLRPKAVIPVDLFGQPADHAAIAAIAEAEGLFVLDDAAQSMGARYK
HHHHHHHHHHHHHHCCCCCEEEEHHCCCCCCCHHHHHEEECCCCEEEECHHHHHCCCCCC
GKRLGTFGAATTTSFFPAKPLGCYGDGGAIFTDDDQLAADLRSIRVHGQGSDKYDNIRLG
CCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHEEEECCCCCCCCCEEEE
LTGRLDTIQAAVLLEKLKIFEDEIVARNKVAERYAQSLGNIVTVPRVADGNTSIWACYTI
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECEECCCCCEEEEEEEE
RLPRGTDRDAFAATLKAQGVPTAVYYGKSVHMQSAYGMFPVAEGGLPVCEALSADVISLP
ECCCCCCCHHHHHHHHCCCCCEEEEECCEEEECHHCCCCEECCCCCHHHHHHCCCCEECC
VHAYLDEATQDRVIAAVRSAVAS
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQHLRTDPVPFVDIGAQRRRIGQSIDDAVGRVLAHCQFIGGPEVAEFEAKLAAYTGAKH
CCCCCCCCCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
VIGCANGTDALLMVLMAKGVGPGDAVFCPSFTFCATVSPAARTGATPILVDVDEATFTID
EEEECCCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCHHHCCCCEEEEEECCCEEEEE
IASLKRAIVTAKKLGLRPKAVIPVDLFGQPADHAAIAAIAEAEGLFVLDDAAQSMGARYK
HHHHHHHHHHHHHHCCCCCEEEEHHCCCCCCCHHHHHEEECCCCEEEECHHHHHCCCCCC
GKRLGTFGAATTTSFFPAKPLGCYGDGGAIFTDDDQLAADLRSIRVHGQGSDKYDNIRLG
CCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHEEEECCCCCCCCCEEEE
LTGRLDTIQAAVLLEKLKIFEDEIVARNKVAERYAQSLGNIVTVPRVADGNTSIWACYTI
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECEECCCCCEEEEEEEE
RLPRGTDRDAFAATLKAQGVPTAVYYGKSVHMQSAYGMFPVAEGGLPVCEALSADVISLP
ECCCCCCCHHHHHHHHCCCCCEEEEECCEEEECHHCCCCEECCCCCHHHHHHCCCCEECC
VHAYLDEATQDRVIAAVRSAVAS
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]