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The map label for this gene is yliB [C]

Identifier: 86748624

GI number: 86748624

Start: 1693476

End: 1695050

Strand: Reverse

Name: yliB [C]

Synonym: RPB_1499

Alternate gene names: 86748624

Gene position: 1695050-1693476 (Counterclockwise)

Preceding gene: 86748626

Following gene: 86748623

Centisome position: 31.79

GC content: 63.43

Gene sequence:

>1575_bases
ATGAGCAGCTTGAGACTGAAATCGTGCGTAGCCGGCCTCCTTCTGGCGACCACCGCAACTTTCGCGCAGGCCGACACGCT
TCGCGTCGTTCCGACCGCGCCGCTTCAGATCCTCGATCCGTTGTCCACGACGGCCTACATTACGCGGGACCATGGCTTCA
TGGTCTACGACACCCTGTTCGGGACCGACCTCGAGGGGAAGGTGCATCCCGAGATGGTGGAAAAATACGCCGTCGACGAG
GCCGCCACGACCTGGACCTTCACGTTGCGCGAAGGGCTCGCCTTTCACGACGGCAGCCCGGTGACCTCTGCGGACGCCAT
CGCCTCGTTGCAGCGATGGCAGTCGAAGGACACCCTCGGCGGCAAGATGAAAGCCCGGACGACCGCCATGACCGCGGTCG
ATGACCGGACCTTCCAGATCAAACTGTCAGCGCCGTTCGGCCCTATGCTCACCGCCCTCGGCAAGCCCTCGGCGATCGTT
CCGTTCATCATGCCGAAGGCCGTGATCGACGAGGCCGGCAGCGGGCCCATCACCAAGATCATCGGGTCGGGTCCTTTCAA
GTTCGTCGCAAACGAATTCAAGCCCGGCGAGCGCGCGGTGTACGTCAAGAACGAAGCGTACAAGCCGCGCAGCGAGCCGG
CGTCGGGAACATCCGGCGGCAAGGTGGTCAAGCTCGACAAGGTCGAATGGATCTTCCTCAAGGACGCCCAGACCGCGGTG
AACGCGCTGCGCAACAAGGAGATCGACTACATCGACCAGCCTTCCTACGAGCAGGTCGCCGACCTGCAGAAGGACCCCAA
CATCGATATCGTCAACCGTCCGCTGTCGCTCTCCTTCGTGATGCGGTTCAATACCCTGACGCCGCCGTTCAACGATCTCA
GGGTGCGACGTGCGGCAATGCTCGCCGTCAACCAGGACGCCGTCCTCAAGGTGCAGATCGGCGTACCCGGCGCTTATCAG
AGCTGCGCCTCGGTCTATCCCTGCGGAACGATCTATTCGAGCACGCCGGACAACTACACCGGCAAACCGAATTTCGCCGA
AGCCAGGAAGCTGCTGGCTGAGGCCAAATACGACGGGACGCCGATCGTTATCCTCGATGCGCCCGAGGTCCGCGTTCAAA
GCAAGACCGCGCCGATGATGTCGGCCCTGCTCCAGCAGGCCGGCTTCAAGACCCAGCTGCTTCCGCTGGATTGGGCGAGC
TGGCTGCAGAAGCGGACCAACACGGCGCCCGCCAAGGATGGCGGCTGGAATCTGTTCATAGCCGCCTGGTCCCCCTACGA
CCTTACGGTTCCGATCTCCTCGGCGCCGCTGACCGCGAACGGCAGGGCCGGATGGCCCGGCTGGTTCGAAGACGCTCAGG
TCGAAGCGCTGCTGGGCCAGTTCATCAATGCCCCGGATCTGCCCGAGCAGAAGGCCATCGCGACCAAGATTCAGACTCGC
ATCCTGGAGCAAGGCGCGATCGCGCCGCTCGGCCAGGCGGATCAGTTCAGCGTGATGCGAAAGGGCTCGCTCGAGGGCCT
GCTGCCGCGGATCGCCTCGACCGTGTTCTGGAACGTGTCGGTGACCGGCAAGTAA

Upstream 100 bases:

>100_bases
TTAGGCATGCCCAACAATAGGGCTCAGGTATTTGGAGGTTGGCCGCAAGGGCTGACGACAACGAGCTTGCGACACATCGC
AAGGGGTGACGGGGAAGTTC

Downstream 100 bases:

>100_bases
CCGGACCGGCAAGTCACGCAGCTCCAACTTCGGCTGGGCAAGAATGGGTAGCTATCTTGTGCGACGGCTGGCGTCCACCA
TCCCCGTGGTGGTTGTCGTT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MSSLRLKSCVAGLLLATTATFAQADTLRVVPTAPLQILDPLSTTAYITRDHGFMVYDTLFGTDLEGKVHPEMVEKYAVDE
AATTWTFTLREGLAFHDGSPVTSADAIASLQRWQSKDTLGGKMKARTTAMTAVDDRTFQIKLSAPFGPMLTALGKPSAIV
PFIMPKAVIDEAGSGPITKIIGSGPFKFVANEFKPGERAVYVKNEAYKPRSEPASGTSGGKVVKLDKVEWIFLKDAQTAV
NALRNKEIDYIDQPSYEQVADLQKDPNIDIVNRPLSLSFVMRFNTLTPPFNDLRVRRAAMLAVNQDAVLKVQIGVPGAYQ
SCASVYPCGTIYSSTPDNYTGKPNFAEARKLLAEAKYDGTPIVILDAPEVRVQSKTAPMMSALLQQAGFKTQLLPLDWAS
WLQKRTNTAPAKDGGWNLFIAAWSPYDLTVPISSAPLTANGRAGWPGWFEDAQVEALLGQFINAPDLPEQKAIATKIQTR
ILEQGAIAPLGQADQFSVMRKGSLEGLLPRIASTVFWNVSVTGK

Sequences:

>Translated_524_residues
MSSLRLKSCVAGLLLATTATFAQADTLRVVPTAPLQILDPLSTTAYITRDHGFMVYDTLFGTDLEGKVHPEMVEKYAVDE
AATTWTFTLREGLAFHDGSPVTSADAIASLQRWQSKDTLGGKMKARTTAMTAVDDRTFQIKLSAPFGPMLTALGKPSAIV
PFIMPKAVIDEAGSGPITKIIGSGPFKFVANEFKPGERAVYVKNEAYKPRSEPASGTSGGKVVKLDKVEWIFLKDAQTAV
NALRNKEIDYIDQPSYEQVADLQKDPNIDIVNRPLSLSFVMRFNTLTPPFNDLRVRRAAMLAVNQDAVLKVQIGVPGAYQ
SCASVYPCGTIYSSTPDNYTGKPNFAEARKLLAEAKYDGTPIVILDAPEVRVQSKTAPMMSALLQQAGFKTQLLPLDWAS
WLQKRTNTAPAKDGGWNLFIAAWSPYDLTVPISSAPLTANGRAGWPGWFEDAQVEALLGQFINAPDLPEQKAIATKIQTR
ILEQGAIAPLGQADQFSVMRKGSLEGLLPRIASTVFWNVSVTGK
>Mature_523_residues
SSLRLKSCVAGLLLATTATFAQADTLRVVPTAPLQILDPLSTTAYITRDHGFMVYDTLFGTDLEGKVHPEMVEKYAVDEA
ATTWTFTLREGLAFHDGSPVTSADAIASLQRWQSKDTLGGKMKARTTAMTAVDDRTFQIKLSAPFGPMLTALGKPSAIVP
FIMPKAVIDEAGSGPITKIIGSGPFKFVANEFKPGERAVYVKNEAYKPRSEPASGTSGGKVVKLDKVEWIFLKDAQTAVN
ALRNKEIDYIDQPSYEQVADLQKDPNIDIVNRPLSLSFVMRFNTLTPPFNDLRVRRAAMLAVNQDAVLKVQIGVPGAYQS
CASVYPCGTIYSSTPDNYTGKPNFAEARKLLAEAKYDGTPIVILDAPEVRVQSKTAPMMSALLQQAGFKTQLLPLDWASW
LQKRTNTAPAKDGGWNLFIAAWSPYDLTVPISSAPLTANGRAGWPGWFEDAQVEALLGQFINAPDLPEQKAIATKIQTRI
LEQGAIAPLGQADQFSVMRKGSLEGLLPRIASTVFWNVSVTGK

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=490, Percent_Identity=25.5102040816327, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789397, Length=521, Percent_Identity=25.1439539347409, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787495, Length=536, Percent_Identity=24.2537313432836, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1789966, Length=445, Percent_Identity=24.0449438202247, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1789887, Length=467, Percent_Identity=23.1263383297645, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787762, Length=307, Percent_Identity=23.7785016286645, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081878, Length=462, Percent_Identity=21.8614718614719, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56950; Mature: 56819

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLRLKSCVAGLLLATTATFAQADTLRVVPTAPLQILDPLSTTAYITRDHGFMVYDTLF
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCEEEEEECCCEEEEEEEE
GTDLEGKVHPEMVEKYAVDEAATTWTFTLREGLAFHDGSPVTSADAIASLQRWQSKDTLG
CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCCC
GKMKARTTAMTAVDDRTFQIKLSAPFGPMLTALGKPSAIVPFIMPKAVIDEAGSGPITKI
CCEEHHEEEEEEECCCEEEEEECCCCCHHHHHCCCCCEEEHHHCCHHHHHCCCCCCHHHH
IGSGPFKFVANEFKPGERAVYVKNEAYKPRSEPASGTSGGKVVKLDKVEWIFLKDAQTAV
HCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECHHHHH
NALRNKEIDYIDQPSYEQVADLQKDPNIDIVNRPLSLSFVMRFNTLTPPFNDLRVRRAAM
HHHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH
LAVNQDAVLKVQIGVPGAYQSCASVYPCGTIYSSTPDNYTGKPNFAEARKLLAEAKYDGT
EEECCCCEEEEEECCCCHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
PIVILDAPEVRVQSKTAPMMSALLQQAGFKTQLLPLDWASWLQKRTNTAPAKDGGWNLFI
CEEEECCCCCEECCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCEEEE
AAWSPYDLTVPISSAPLTANGRAGWPGWFEDAQVEALLGQFINAPDLPEQKAIATKIQTR
EEECCCEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ILEQGAIAPLGQADQFSVMRKGSLEGLLPRIASTVFWNVSVTGK
HHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHEEEEEEEEECC
>Mature Secondary Structure 
SSLRLKSCVAGLLLATTATFAQADTLRVVPTAPLQILDPLSTTAYITRDHGFMVYDTLF
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCCEEEEEECCCEEEEEEEE
GTDLEGKVHPEMVEKYAVDEAATTWTFTLREGLAFHDGSPVTSADAIASLQRWQSKDTLG
CCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCCC
GKMKARTTAMTAVDDRTFQIKLSAPFGPMLTALGKPSAIVPFIMPKAVIDEAGSGPITKI
CCEEHHEEEEEEECCCEEEEEECCCCCHHHHHCCCCCEEEHHHCCHHHHHCCCCCCHHHH
IGSGPFKFVANEFKPGERAVYVKNEAYKPRSEPASGTSGGKVVKLDKVEWIFLKDAQTAV
HCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECHHHHH
NALRNKEIDYIDQPSYEQVADLQKDPNIDIVNRPLSLSFVMRFNTLTPPFNDLRVRRAAM
HHHHCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH
LAVNQDAVLKVQIGVPGAYQSCASVYPCGTIYSSTPDNYTGKPNFAEARKLLAEAKYDGT
EEECCCCEEEEEECCCCHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
PIVILDAPEVRVQSKTAPMMSALLQQAGFKTQLLPLDWASWLQKRTNTAPAKDGGWNLFI
CEEEECCCCCEECCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCEEEE
AAWSPYDLTVPISSAPLTANGRAGWPGWFEDAQVEALLGQFINAPDLPEQKAIATKIQTR
EEECCCEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ILEQGAIAPLGQADQFSVMRKGSLEGLLPRIASTVFWNVSVTGK
HHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]