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The map label for this gene is yliC [C]

Identifier: 86748623

GI number: 86748623

Start: 1692491

End: 1693417

Strand: Reverse

Name: yliC [C]

Synonym: RPB_1498

Alternate gene names: 86748623

Gene position: 1693417-1692491 (Counterclockwise)

Preceding gene: 86748624

Following gene: 86748622

Centisome position: 31.76

GC content: 63.75

Gene sequence:

>927_bases
GTGCGACGGCTGGCGTCCACCATCCCCGTGGTGGTTGTCGTTGCCGCTCTCATCTTCTTTGTTCTGCGGCTCGCCCCCGG
CGATCCGGCTTTGGCCATCGCCGGGGACGGCGCGACGCCGGCACAACTGGAAGCCCTTCGGGCCCAGCTCGGCCTCGACA
AGAGCATTTTGCAGCAATTCCTCATCTGGGGGGAATCGCTGCTCCGATTGGATCTCGGCCAGTCCCTCTACTACCACATC
CCCGTCACCACGCTCATCGGCCAGCGCCTGCCTCCGACGGCAAGCCTGGCGATCCTGACCATGCTCATCTCGGTCCCGAT
CGCCGTCTATCTCGGCGCACTGGCGGCGTCCCGGCAAGGAAGCTCGATCGATCGCATGGTGAATGCGAGCGCCGTCATCG
CATTCTCCATACCCGTCTTCGTGCTGGGTTACGTCCTGATCTGGCTGTTTGCGCTGAAAATGGGTCTGCTTCCGGTGCAG
GGCACCGGCCCTGCGGACGCCGGACTGTTGACGAAACTCAAATACTTCATCCTTCCGGCCGTCGGACTGGCGTTCGGCCA
GATCGCGCTGCTGACACGCGTAACGCGCGCCTCGGTCATCGACGTCCTGCACGAGGATTTCATCAAGACCGCCTACGCGA
AGGGCGCCTCCGCAAAGCGGGTTCTGTGGCGCCACGCCGTTCGCAACGCCGCGGTCCCCATCGTCACCATCATCGGGCTG
TCCTTCGCGGTGCTGATCGGCGGCGTGGTCGTCTCCGAGACCGTTTACGCCATTCCCGGGCTCGGCAAACTGACCGTCGA
CTCGGTGCTGGCGCGGGACTTCCCGGTGGTCCAGGGCCTCGTGATCTTTTTCTCGTTCACCTATGTCGGCATCAACCTGC
TGGTCGACGTCCTCTACGTCGCGCTCGACCCGCGCATTCGATATTGA

Upstream 100 bases:

>100_bases
GCCTCGACCGTGTTCTGGAACGTGTCGGTGACCGGCAAGTAACCGGACCGGCAAGTCACGCAGCTCCAACTTCGGCTGGG
CAAGAATGGGTAGCTATCTT

Downstream 100 bases:

>100_bases
GCGGAGCCGGCATGAATTCGATCGTCTCCCCCGAAGACGGATTGTCGCCCGACGCAGCCCCGGTGTCGGCCGAAGCGCCG
TGGCGCGGGACGCTGCGCCG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRRLASTIPVVVVVAALIFFVLRLAPGDPALAIAGDGATPAQLEALRAQLGLDKSILQQFLIWGESLLRLDLGQSLYYHI
PVTTLIGQRLPPTASLAILTMLISVPIAVYLGALAASRQGSSIDRMVNASAVIAFSIPVFVLGYVLIWLFALKMGLLPVQ
GTGPADAGLLTKLKYFILPAVGLAFGQIALLTRVTRASVIDVLHEDFIKTAYAKGASAKRVLWRHAVRNAAVPIVTIIGL
SFAVLIGGVVVSETVYAIPGLGKLTVDSVLARDFPVVQGLVIFFSFTYVGINLLVDVLYVALDPRIRY

Sequences:

>Translated_308_residues
MRRLASTIPVVVVVAALIFFVLRLAPGDPALAIAGDGATPAQLEALRAQLGLDKSILQQFLIWGESLLRLDLGQSLYYHI
PVTTLIGQRLPPTASLAILTMLISVPIAVYLGALAASRQGSSIDRMVNASAVIAFSIPVFVLGYVLIWLFALKMGLLPVQ
GTGPADAGLLTKLKYFILPAVGLAFGQIALLTRVTRASVIDVLHEDFIKTAYAKGASAKRVLWRHAVRNAAVPIVTIIGL
SFAVLIGGVVVSETVYAIPGLGKLTVDSVLARDFPVVQGLVIFFSFTYVGINLLVDVLYVALDPRIRY
>Mature_308_residues
MRRLASTIPVVVVVAALIFFVLRLAPGDPALAIAGDGATPAQLEALRAQLGLDKSILQQFLIWGESLLRLDLGQSLYYHI
PVTTLIGQRLPPTASLAILTMLISVPIAVYLGALAASRQGSSIDRMVNASAVIAFSIPVFVLGYVLIWLFALKMGLLPVQ
GTGPADAGLLTKLKYFILPAVGLAFGQIALLTRVTRASVIDVLHEDFIKTAYAKGASAKRVLWRHAVRNAAVPIVTIIGL
SFAVLIGGVVVSETVYAIPGLGKLTVDSVLARDFPVVQGLVIFFSFTYVGINLLVDVLYVALDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=40.9090909090909, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1789965, Length=334, Percent_Identity=36.2275449101796, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787497, Length=310, Percent_Identity=35.1612903225806, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=35.031847133758, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=35.3658536585366, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788504, Length=356, Percent_Identity=27.247191011236, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=25.6410256410256, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32914; Mature: 32914

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLASTIPVVVVVAALIFFVLRLAPGDPALAIAGDGATPAQLEALRAQLGLDKSILQQF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHH
LIWGESLLRLDLGQSLYYHIPVTTLIGQRLPPTASLAILTMLISVPIAVYLGALAASRQG
HHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSIDRMVNASAVIAFSIPVFVLGYVLIWLFALKMGLLPVQGTGPADAGLLTKLKYFILPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHH
VGLAFGQIALLTRVTRASVIDVLHEDFIKTAYAKGASAKRVLWRHAVRNAAVPIVTIIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
SFAVLIGGVVVSETVYAIPGLGKLTVDSVLARDFPVVQGLVIFFSFTYVGINLLVDVLYV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDPRIRY
HHCCCCCC
>Mature Secondary Structure
MRRLASTIPVVVVVAALIFFVLRLAPGDPALAIAGDGATPAQLEALRAQLGLDKSILQQF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHH
LIWGESLLRLDLGQSLYYHIPVTTLIGQRLPPTASLAILTMLISVPIAVYLGALAASRQG
HHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSIDRMVNASAVIAFSIPVFVLGYVLIWLFALKMGLLPVQGTGPADAGLLTKLKYFILPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHH
VGLAFGQIALLTRVTRASVIDVLHEDFIKTAYAKGASAKRVLWRHAVRNAAVPIVTIIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
SFAVLIGGVVVSETVYAIPGLGKLTVDSVLARDFPVVQGLVIFFSFTYVGINLLVDVLYV
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDPRIRY
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]