Click here to switch to the map view.

The map label for this gene is lrp [C]

Identifier: 86748626

GI number: 86748626

Start: 1696216

End: 1696692

Strand: Reverse

Name: lrp [C]

Synonym: RPB_1501

Alternate gene names: 86748626

Gene position: 1696692-1696216 (Counterclockwise)

Preceding gene: 86748629

Following gene: 86748624

Centisome position: 31.82

GC content: 62.89

Gene sequence:

>477_bases
ATGACGACCGAGACCGATCCGATCGACCGAAAGATCCTCCGCCATCTCGTCCAGGACGCGCGGATCAGTCAGGTCGTCCT
CTCCGAACGGGTCGGGCTGTCGCCGACGGCTTGTACGCGACGGATGCTCCAACTCGAGAAGACCGGCGTCATCAGAGGAT
ACTCGGCCGACGTCGACGCCGCCGAGCTCGGCTTCACGATGACGGTGCTGGTGCACATCACGCTGGACAAACAGAGCGAG
GATGCGCTGTCGGCGTTCGAACGCGAGATCGTCAAATGCCCCGACGTGGTGTCCTGCTTTCTGATGTCGGGAAACGACGA
CTACCTCGTGCAGGTGCAGGCCCGCGACATGCAGGACTATGAGCGCATCCACAAACAGCATCTGTCCCGCATGCCTGGGG
TGTCGCGCCTGCATTCGAGTTTCGTCATGCGCAGCGTCATCGAGCGCAGCATCTCGCCGGCCGCGCTCGGCGGTTAG

Upstream 100 bases:

>100_bases
TTGTTGGCGAATTTTTATGGTAACCGTCCATTCAACGACGGAATTCTGCGCAATCCGCCGGATTTAGTCGATATTCCTGC
AGAAGAGGCGATTTGGCGTC

Downstream 100 bases:

>100_bases
CCCATCCCGGCGCCCATGCGATAAAGCCGCCCCCCCCCCCGGGACAGCCGCTCCGCACTGCTGCGATCTGACCGCCGCGG
GCCTTGAGTTCATGATTCCG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: ORF-1 [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGVIRGYSADVDAAELGFTMTVLVHITLDKQSE
DALSAFEREIVKCPDVVSCFLMSGNDDYLVQVQARDMQDYERIHKQHLSRMPGVSRLHSSFVMRSVIERSISPAALGG

Sequences:

>Translated_158_residues
MTTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGVIRGYSADVDAAELGFTMTVLVHITLDKQSE
DALSAFEREIVKCPDVVSCFLMSGNDDYLVQVQARDMQDYERIHKQHLSRMPGVSRLHSSFVMRSVIERSISPAALGG
>Mature_157_residues
TTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGVIRGYSADVDAAELGFTMTVLVHITLDKQSED
ALSAFEREIVKCPDVVSCFLMSGNDDYLVQVQARDMQDYERIHKQHLSRMPGVSRLHSSFVMRSVIERSISPAALGG

Specific function: Not known, symbiotically active [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=141, Percent_Identity=40.4255319148936, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI87081742, Length=141, Percent_Identity=34.7517730496454, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17691; Mature: 17559

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGVIRGYSADVDA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
AELGFTMTVLVHITLDKQSEDALSAFEREIVKCPDVVSCFLMSGNDDYLVQVQARDMQDY
HHHHHEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHH
ERIHKQHLSRMPGVSRLHSSFVMRSVIERSISPAALGG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGVIRGYSADVDA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
AELGFTMTVLVHITLDKQSEDALSAFEREIVKCPDVVSCFLMSGNDDYLVQVQARDMQDY
HHHHHEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCHHHH
ERIHKQHLSRMPGVSRLHSSFVMRSVIERSISPAALGG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8190622; 9163424 [H]