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The map label for this gene is yliD [C]

Identifier: 86748622

GI number: 86748622

Start: 1691532

End: 1692494

Strand: Reverse

Name: yliD [C]

Synonym: RPB_1497

Alternate gene names: 86748622

Gene position: 1692494-1691532 (Counterclockwise)

Preceding gene: 86748623

Following gene: 86748621

Centisome position: 31.74

GC content: 64.17

Gene sequence:

>963_bases
TTGAGCGGAGCCGGCATGAATTCGATCGTCTCCCCCGAAGACGGATTGTCGCCCGACGCAGCCCCGGTGTCGGCCGAAGC
GCCGTGGCGCGGGACGCTGCGCCGCCTGCTGCGGCACTCCGGAGTCCAGATCGGCGGCCTCCTGTTCCTGCTGATCGTGC
TGATCGCCGTCTTCGCCCCCTATCTCTACACGATCGACCCCGCATCGATGGATCCGATGCTGGTCAGCATTCCGATCGGA
ACGAGTACGACCTTCACCGATCTGTCCGGCGACTCGTTCGCGCACTACTTCGTGTTCGGCACGGACAGTATGGGTCGCGA
CGTCTACAGCCGTGTCGTTTACGGCGCGCGGATCTCGCTGACCGTGGGGGCCTCTGTGGCCGCGGCGAGCATCGTCGTCG
GCTGTTTGATCGGCCTGTTCGCAGGCTATGTCCGACGCCTCGACGGCCCGTTGATGCGCGTCATGGACGGTCTGATGGCG
GTTCCTTCGATCCTGCTCGCCATCGCCCTCGTGTCGCTGTGGAACGTGTCGCTGACGACGCTGGTGATCGCCATCGCCAT
TCCCGACCTTCCCCGGGTGGCGCGCGTGGTGCGTGCGACGGTTTTGTCGGTCAAGACGATCGCCTTCGTGGAGGCCGCCC
GGATGATGTGTACGCCGTGGTGGAAGATCATGTGGCGACACATCCTCCCTGCCGTGATGGCGCCGCTCGCGATCCAGGGA
ACGTTCATTTTCGGCTCGGCGATTCTGGTCGAAGCGGTTCTCTCTTTCCTCGGCGTCGGCTTCACCAGCGACGTGCCGAC
CTGGGGCAATGTGATGGCCGACGGCCGTGTCAATTTCAACCTGGCGCCGCATCTCGTCCTCATCCCCGGTGCGTTCCTGG
CGGTGACCATCGTCGCCATCAACATGATCGGCGACGGCCTGAGAGACGTGCTCGATCCCAAATACGCACCGGTCGAAAGC
TGA

Upstream 100 bases:

>100_bases
CGGTGGTCCAGGGCCTCGTGATCTTTTTCTCGTTCACCTATGTCGGCATCAACCTGCTGGTCGACGTCCTCTACGTCGCG
CTCGACCCGCGCATTCGATA

Downstream 100 bases:

>100_bases
TGAAGAGCCCCGTCCTCGAGATCGACAATCTGGTCGTCGACCTGCCCGCCAGCGGCGACCGGTCTCACGCCGTCAAGGGC
ATGAACCTGTCGATCGCCGC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSGAGMNSIVSPEDGLSPDAAPVSAEAPWRGTLRRLLRHSGVQIGGLLFLLIVLIAVFAPYLYTIDPASMDPMLVSIPIG
TSTTFTDLSGDSFAHYFVFGTDSMGRDVYSRVVYGARISLTVGASVAAASIVVGCLIGLFAGYVRRLDGPLMRVMDGLMA
VPSILLAIALVSLWNVSLTTLVIAIAIPDLPRVARVVRATVLSVKTIAFVEAARMMCTPWWKIMWRHILPAVMAPLAIQG
TFIFGSAILVEAVLSFLGVGFTSDVPTWGNVMADGRVNFNLAPHLVLIPGAFLAVTIVAINMIGDGLRDVLDPKYAPVES

Sequences:

>Translated_320_residues
MSGAGMNSIVSPEDGLSPDAAPVSAEAPWRGTLRRLLRHSGVQIGGLLFLLIVLIAVFAPYLYTIDPASMDPMLVSIPIG
TSTTFTDLSGDSFAHYFVFGTDSMGRDVYSRVVYGARISLTVGASVAAASIVVGCLIGLFAGYVRRLDGPLMRVMDGLMA
VPSILLAIALVSLWNVSLTTLVIAIAIPDLPRVARVVRATVLSVKTIAFVEAARMMCTPWWKIMWRHILPAVMAPLAIQG
TFIFGSAILVEAVLSFLGVGFTSDVPTWGNVMADGRVNFNLAPHLVLIPGAFLAVTIVAINMIGDGLRDVLDPKYAPVES
>Mature_319_residues
SGAGMNSIVSPEDGLSPDAAPVSAEAPWRGTLRRLLRHSGVQIGGLLFLLIVLIAVFAPYLYTIDPASMDPMLVSIPIGT
STTFTDLSGDSFAHYFVFGTDSMGRDVYSRVVYGARISLTVGASVAAASIVVGCLIGLFAGYVRRLDGPLMRVMDGLMAV
PSILLAIALVSLWNVSLTTLVIAIAIPDLPRVARVVRATVLSVKTIAFVEAARMMCTPWWKIMWRHILPAVMAPLAIQGT
FIFGSAILVEAVLSFLGVGFTSDVPTWGNVMADGRVNFNLAPHLVLIPGAFLAVTIVAINMIGDGLRDVLDPKYAPVES

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=299, Percent_Identity=35.1170568561873, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1787760, Length=276, Percent_Identity=35.1449275362319, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1787498, Length=298, Percent_Identity=34.5637583892617, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789964, Length=279, Percent_Identity=37.2759856630824, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1789889, Length=217, Percent_Identity=34.1013824884793, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787549, Length=213, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=31.3636363636364, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34031; Mature: 33900

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAGMNSIVSPEDGLSPDAAPVSAEAPWRGTLRRLLRHSGVQIGGLLFLLIVLIAVFAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YLYTIDPASMDPMLVSIPIGTSTTFTDLSGDSFAHYFVFGTDSMGRDVYSRVVYGARISL
HHEEECCCCCCCEEEEEECCCCCCEEECCCCCEEEEEEEECCHHHHHHHHHHHHCCEEEE
TVGASVAAASIVVGCLIGLFAGYVRRLDGPLMRVMDGLMAVPSILLAIALVSLWNVSLTT
EECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVIAIAIPDLPRVARVVRATVLSVKTIAFVEAARMMCTPWWKIMWRHILPAVMAPLAIQG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
TFIFGSAILVEAVLSFLGVGFTSDVPTWGNVMADGRVNFNLAPHLVLIPGAFLAVTIVAI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECCCCCEEECCHHHHHHHHHHH
NMIGDGLRDVLDPKYAPVES
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SGAGMNSIVSPEDGLSPDAAPVSAEAPWRGTLRRLLRHSGVQIGGLLFLLIVLIAVFAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
YLYTIDPASMDPMLVSIPIGTSTTFTDLSGDSFAHYFVFGTDSMGRDVYSRVVYGARISL
HHEEECCCCCCCEEEEEECCCCCCEEECCCCCEEEEEEEECCHHHHHHHHHHHHCCEEEE
TVGASVAAASIVVGCLIGLFAGYVRRLDGPLMRVMDGLMAVPSILLAIALVSLWNVSLTT
EECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVIAIAIPDLPRVARVVRATVLSVKTIAFVEAARMMCTPWWKIMWRHILPAVMAPLAIQG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
TFIFGSAILVEAVLSFLGVGFTSDVPTWGNVMADGRVNFNLAPHLVLIPGAFLAVTIVAI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECCCCCEEECCHHHHHHHHHHH
NMIGDGLRDVLDPKYAPVES
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]