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The map label for this gene is fliN [H]

Identifier: 86748400

GI number: 86748400

Start: 1461657

End: 1462007

Strand: Direct

Name: fliN [H]

Synonym: RPB_1275

Alternate gene names: 86748400

Gene position: 1461657-1462007 (Clockwise)

Preceding gene: 86748399

Following gene: 86748401

Centisome position: 27.41

GC content: 65.81

Gene sequence:

>351_bases
ATGGGCGACAATGACGGCCAGGTGCCGCTTCCCGATCTGAACGGCGCCGACGCGCCGCCGCTGGCGGATGTCGGTTACCA
CGAGGAAGAACAGACCTCGCGCGTCGCCGCCGATCTCGAAGCGGTGTTCGACGTTCCGGTGCAGGTCTCGGCCGTGCTCG
GCCGCTCCAAGATGGACGTCGGCGAATTGCTCAAGCTCGGGCCCGGCGCGGTGCTGGAGCTCGATCGCCGGGTCGGCGAA
GCGATCGACATCTACGTGAACAATCGCCTGGTGGCGCGCGGCGAAGTGGTGCTGGTCGAGGACAAGCTCGGCGTCACCAT
GACCGAAATCATCAAGGCGGAACGCAGCTAA

Upstream 100 bases:

>100_bases
CGGCGGCGTGGTGCTGGACCGCGCCGCGATCGAAGCCAAGATCGGTGAATTGGTCGGGCGCTACATGGCGTCGCGCCGCT
AACGAGTTCGAGGACTGAAC

Downstream 100 bases:

>100_bases
TTCGGAAGCCCGCGTCGGCGCGGCAGGACACAGGATCACAGGAGCGAACCATGCGGCTTCTCATCGTCGGCACCCTGAAG
GGCCAACTCACAACCGCGAC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MGDNDGQVPLPDLNGADAPPLADVGYHEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGE
AIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS

Sequences:

>Translated_116_residues
MGDNDGQVPLPDLNGADAPPLADVGYHEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGE
AIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS
>Mature_115_residues
GDNDGQVPLPDLNGADAPPLADVGYHEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEA
IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=125, Percent_Identity=36, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12408; Mature: 12277

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDNDGQVPLPDLNGADAPPLADVGYHEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCH
GELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS
HHHHHCCCCCEEHHHHHCCCEEEEEECCEEECCCCEEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure 
GDNDGQVPLPDLNGADAPPLADVGYHEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDV
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCH
GELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERS
HHHHHCCCCCEEHHHHHCCCEEEEEECCEEECCCCEEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647; 2315326; 1732219 [H]