Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

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The map label for this gene is ucpA [C]

Identifier: 86747456

GI number: 86747456

Start: 375435

End: 376184

Strand: Direct

Name: ucpA [C]

Synonym: RPB_0330

Alternate gene names: 86747456

Gene position: 375435-376184 (Clockwise)

Preceding gene: 86747454

Following gene: 86747457

Centisome position: 7.04

GC content: 68.53

Gene sequence:

>750_bases
ATGAACAGGAACGGGAACCGCGTGGCCTGGGTCACCGGCGGCGGCAGCGGTATCGGCGAGGCCGGCGCGGAAGCGCTCGC
TGCCGATGGCTTCACCGTGGTGGTGTCGGGACGGCGGGCGGAGGCGCTCGACCAGGTGGTGGCGAAGATCAAAGCGCGCG
GCGGCACGGCCGCAGCGATCGCGCTGGACGTCAGTGACTCCGGCGCCGTGATCGCCGCGGCGGACCGGATCGTCGCCACG
CATGGCCGGATCGACTGTCTCGTCAACTCCGCCGGCCTCAACGTGCCGAAACGCTCCTGGGCCGACATGGAGCTCGACGG
TTGGAACAAGCTCGTCGAGATCAATCTCGACGGCGTGCTGTACTGCATGCGCGCGGTGCTGCCGACGATGCGGGCGCAGC
GGGACGGCTGCATCATCAACGTCTCGTCCTGGGCTGGGCGCCACGTCTCCAAGATGCCGGGGCCGGCCTATACCGCCACC
AAGCACGCGGTGCTGGCGCTGACGCATTCCTTCAACATGGACGAATGCGTCAACGGCCTGCGCGCCTGCTGCCTGATGCC
GGCGGAGGTCGCCACCCCGATCCTGAAACTGCGGCCGGTGGTGCCGAGCGCCGAGGATCAGGCGCGGATGCTGCAGCCCG
ACGATCTCGGCCGCACCATCGCCTTCGTCGCAACGATGCCGCCGCATGTCTGCGTCAACGAGATCCTGATCAGCCCGACC
TGGAATCGGTCGTTCGTCGGCGGGTTGTGA

Upstream 100 bases:

>100_bases
TTGGCGTTCATGTTGGTGTTTCCGTGCGCGTTCATGCAACATTCGCGAAGGGCGATTGCATAGCAAGAACGTCCATCGCA
AAGCAACGGAGACAGTTTGC

Downstream 100 bases:

>100_bases
GTTCGAGTGACCTCTCCCGCTTGCGGGGGAGATCGGATCGCGTAGCGATCCGGGTGGGGGAAGCTGACTCTTGGTAATTG
CTTTCTCAATGCTCGGCTCG

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNRNGNRVAWVTGGGSGIGEAGAEALAADGFTVVVSGRRAEALDQVVAKIKARGGTAAAIALDVSDSGAVIAAADRIVAT
HGRIDCLVNSAGLNVPKRSWADMELDGWNKLVEINLDGVLYCMRAVLPTMRAQRDGCIINVSSWAGRHVSKMPGPAYTAT
KHAVLALTHSFNMDECVNGLRACCLMPAEVATPILKLRPVVPSAEDQARMLQPDDLGRTIAFVATMPPHVCVNEILISPT
WNRSFVGGL

Sequences:

>Translated_249_residues
MNRNGNRVAWVTGGGSGIGEAGAEALAADGFTVVVSGRRAEALDQVVAKIKARGGTAAAIALDVSDSGAVIAAADRIVAT
HGRIDCLVNSAGLNVPKRSWADMELDGWNKLVEINLDGVLYCMRAVLPTMRAQRDGCIINVSSWAGRHVSKMPGPAYTAT
KHAVLALTHSFNMDECVNGLRACCLMPAEVATPILKLRPVVPSAEDQARMLQPDDLGRTIAFVATMPPHVCVNEILISPT
WNRSFVGGL
>Mature_249_residues
MNRNGNRVAWVTGGGSGIGEAGAEALAADGFTVVVSGRRAEALDQVVAKIKARGGTAAAIALDVSDSGAVIAAADRIVAT
HGRIDCLVNSAGLNVPKRSWADMELDGWNKLVEINLDGVLYCMRAVLPTMRAQRDGCIINVSSWAGRHVSKMPGPAYTAT
KHAVLALTHSFNMDECVNGLRACCLMPAEVATPILKLRPVVPSAEDQARMLQPDDLGRTIAFVATMPPHVCVNEILISPT
WNRSFVGGL

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=30.1587301587302, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=29.5081967213115, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI20149619, Length=171, Percent_Identity=33.9181286549708, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI7706318, Length=180, Percent_Identity=35, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI59889578, Length=193, Percent_Identity=29.5336787564767, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI5031737, Length=200, Percent_Identity=32, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI33667109, Length=200, Percent_Identity=32, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=33.695652173913, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4504505, Length=221, Percent_Identity=30.316742081448, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=29.9595141700405, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=30.8510638297872, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI15277342, Length=240, Percent_Identity=28.75, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI142976729, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224922801, Length=178, Percent_Identity=35.3932584269663, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=159, Percent_Identity=32.0754716981132, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=26.1044176706827, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923817, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=215, Percent_Identity=33.4883720930233, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787820, Length=246, Percent_Identity=27.6422764227642, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=30.8900523560209, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788459, Length=203, Percent_Identity=30.0492610837438, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787905, Length=227, Percent_Identity=28.1938325991189, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=26.7206477732794, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789057, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=26.3440860215054, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787526, Length=214, Percent_Identity=27.1028037383178, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=27.2727272727273, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=245, Percent_Identity=26.1224489795918, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=189, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=29.7560975609756, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=199, Percent_Identity=29.6482412060301, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=28.6821705426357, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=244, Percent_Identity=26.2295081967213, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=259, Percent_Identity=27.7992277992278, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=26.8, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=199, Percent_Identity=34.1708542713568, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=246, Percent_Identity=29.2682926829268, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=228, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=249, Percent_Identity=26.5060240963855, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=242, Percent_Identity=25.6198347107438, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=244, Percent_Identity=26.2295081967213, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=197, Percent_Identity=27.9187817258883, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=227, Percent_Identity=25.1101321585903, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=249, Percent_Identity=27.3092369477912, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=253, Percent_Identity=24.5059288537549, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=207, Percent_Identity=29.951690821256, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=244, Percent_Identity=25.8196721311475, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=242, Percent_Identity=25.2066115702479, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=242, Percent_Identity=23.9669421487603, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=175, Percent_Identity=33.7142857142857, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=25.6, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116007236, Length=249, Percent_Identity=32.1285140562249, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=32.1428571428571, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI116007234, Length=247, Percent_Identity=31.9838056680162, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571387, Length=248, Percent_Identity=32.6612903225806, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355319, Length=196, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=32.967032967033, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24641388, Length=251, Percent_Identity=31.4741035856574, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=29.3877551020408, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI23397609, Length=210, Percent_Identity=33.8095238095238, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648693, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21355889, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI18859837, Length=220, Percent_Identity=30, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=28.9156626506024, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=32.6633165829146, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=246, Percent_Identity=25.2032520325203, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=28.740157480315, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI17737361, Length=206, Percent_Identity=29.126213592233, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007232, Length=182, Percent_Identity=34.0659340659341, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21356301, Length=188, Percent_Identity=31.3829787234043, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26283; Mature: 26283

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNRNGNRVAWVTGGGSGIGEAGAEALAADGFTVVVSGRRAEALDQVVAKIKARGGTAAAI
CCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
ALDVSDSGAVIAAADRIVATHGRIDCLVNSAGLNVPKRSWADMELDGWNKLVEINLDGVL
EEEECCCCCEEEECCEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEEEECCHHH
YCMRAVLPTMRAQRDGCIINVSSWAGRHVSKMPGPAYTATKHAVLALTHSFNMDECVNGL
HHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
RACCLMPAEVATPILKLRPVVPSAEDQARMLQPDDLGRTIAFVATMPPHVCVNEILISPT
HHHHCCCHHHHCCHHEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHEEECCC
WNRSFVGGL
CCCCCCCCC
>Mature Secondary Structure
MNRNGNRVAWVTGGGSGIGEAGAEALAADGFTVVVSGRRAEALDQVVAKIKARGGTAAAI
CCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
ALDVSDSGAVIAAADRIVATHGRIDCLVNSAGLNVPKRSWADMELDGWNKLVEINLDGVL
EEEECCCCCEEEECCEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCEEEEEECCHHH
YCMRAVLPTMRAQRDGCIINVSSWAGRHVSKMPGPAYTATKHAVLALTHSFNMDECVNGL
HHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
RACCLMPAEVATPILKLRPVVPSAEDQARMLQPDDLGRTIAFVATMPPHVCVNEILISPT
HHHHCCCHHHHCCHHEEECCCCCCCCHHHCCCCCCCCCEEEEEECCCCHHHHHHEEECCC
WNRSFVGGL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA