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The map label for this gene is ydcM [C]

Identifier: 86610133

GI number: 86610133

Start: 2796783

End: 2798000

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2707

Alternate gene names: 86610133

Gene position: 2796783-2798000 (Clockwise)

Preceding gene: 86610132

Following gene: 86610134

Centisome position: 91.8

GC content: 55.34

Gene sequence:

>1218_bases
ATGAGCCAAGTCCTGACCATCTCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCTAAATTGGACGCGACGATGGATGC
CTTTGTGCAGGCACTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAATGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGCGCCCGATTCGGCTTGTCTAGCAACTTGGCCCAACAGGTCTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGACGCACGCATCTTCTCGTTCCG
TCAAAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAACTGGCCATTGGCAACTACCAGCGTG
GGATGCTGGCTGGTTCCAACCCCAAATCTGCCACCCTGGTCAAGCGCAAAGATGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAACCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGGAGGACAGATATTGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACAAAGTCCGCGACCACTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTAC
CAACAGCGCTATTGCTCTGGAAGACTTGACAGGGATCCGGGAAAGGGTCAATCAACAACCCCGCAGCAAAACCGAAAGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTACGTCAATTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGATT
CTTGTGCCGCCTGCCTACACGTCGCAGACCTGCCACCGGTGTTTGCACATCCATCCCGACCCTGCGCAATCCTACCGCAG
TGGCAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGAGATGCGGACTTGAATGGTGCAAACGTAATTGCGCTCTTGG
GGGCTGCCGTAAACCAGCCTAGAGGTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTAG

Upstream 100 bases:

>100_bases
TACCTGCATTGCGATATCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
CGGTCGGAGCCGGGTAGTTTACGGGTATAGCACCGGACACTAGACTGCTCTATGCACCAGCACCAGTTGCCCATGCCGAT
TGCAGCTTGCCCATCAAAGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MSQVLTISCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATES
PLRTA

Sequences:

>Translated_405_residues
MSQVLTISCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLI
LVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATES
PLRTA
>Mature_404_residues
SQVLTISCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFRQKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
SRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWAFYQLRQFLEYKARVAGVSLIL
VPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESP
LRTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=242, Percent_Identity=27.6859504132231, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45972; Mature: 45841

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SQVLTISCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFRQKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVKRKDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKTERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARVAGVSLILVPPAYTSQTCHRCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHEECCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTA
CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]