| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is coxB [H]
Identifier: 86610123
GI number: 86610123
Start: 2785261
End: 2786232
Strand: Direct
Name: coxB [H]
Synonym: CYB_2697
Alternate gene names: 86610123
Gene position: 2785261-2786232 (Clockwise)
Preceding gene: 86610118
Following gene: 86610124
Centisome position: 91.42
GC content: 59.67
Gene sequence:
>972_bases ATGGGGATCCTCCTGACCCTGGCAAGCCTTTGGTACGGGCAAAACCACCATCTGCTTCCCGAATCTGCTGCCGAATCAGC CCCCTTGTTCGACAGCCTCTTTAACAGCACCATGACCATTGCCACAGGGATCTTTTTGGTGGTACAGGGAGTGCTTCTCT ACTGTATTGTCCGCTACCGCAAGCGGCGAGGCGACAAAGGCGACGGGGATCCCAATCACGGCAATGTGCTGTTGGAGATC GTGTGGACGGCGGTGCCGGCGGTGATCATTCTTTGGTTGGGCTTGGCCAGTATAGATGTCTATCAGGCTGTTTACGGGGG CACCGATGTGGGCGGCCATATCCACACGGCCATGGTGATGGAGTCTTCCCACGAAGCTGAGGCGGGGGATCCCGGCTACG CTTATACCCCTGTAGTGCTACCCGGGAAGGAAATGGGCCAGCCGGATCTGGTCGTTCAGGTGCAGGGCATGCAGTACGCT TGGCTGTTCACCTATCCGGAGTCCGGCCTGGTGGCCAGCGAGCTGCACCTTCCTCTGAACAAGCGGGTGCGCTTGGATAT GACGGCTCTGGATGTGAACCATGCCTTCTGGGTGCCGCAGTTTCGCCTCAAGCAGGATGTGATCCCGGGCCGAGAGACCC ACCTGGAGTTTGTGCCCACTCAACTGGGGCAGTACCCCATCATCTGCGCAGAGCTGTGCGGCCCCTATCATGGGGTGATG GCAGGGCAATTGTTTGTGGATACGCCGGAAGACTTCGAGCGCTGGCAGCAGGAGCAAGTTTTGGCCGCCCGTGGCGAGGG CAGCACCTTGGCCCTCGTTTCAGATTTCTCGCCAGTCCATCCCTCTCCTCGGCCAGGCTCCCCTGAGGCCGAGTCTGCCT TTGCCCATGTCCACCACCAGCGTTTGGGCGTCTCCCCCTCAGATTTGAAGTCTCTCCAGTCCCATTCTGGATCCCTTCCT TCCGCAGGCTAG
Upstream 100 bases:
>100_bases AGTCTGCAAACGCTGTGGGCGGATTGTCTGCTAGGGTAGATGCTCTCTGTATTGGGGAAAAGCAGTCGTGAGTGCGATTA GCAACATCATCTTGGTGGGT
Downstream 100 bases:
>100_bases CTGGGATCCCTGACGCCCCTTTGGCCTGCGCTTGTGGGAACAACATTCTGCCAACGCGATATAGGAGCTTTTGTGCAATG ACCCAGCTGCAAGACAGCCC
Product: cytochrome c oxidase, subunit II
Products: NA
Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MGILLTLASLWYGQNHHLLPESAAESAPLFDSLFNSTMTIATGIFLVVQGVLLYCIVRYRKRRGDKGDGDPNHGNVLLEI VWTAVPAVIILWLGLASIDVYQAVYGGTDVGGHIHTAMVMESSHEAEAGDPGYAYTPVVLPGKEMGQPDLVVQVQGMQYA WLFTYPESGLVASELHLPLNKRVRLDMTALDVNHAFWVPQFRLKQDVIPGRETHLEFVPTQLGQYPIICAELCGPYHGVM AGQLFVDTPEDFERWQQEQVLAARGEGSTLALVSDFSPVHPSPRPGSPEAESAFAHVHHQRLGVSPSDLKSLQSHSGSLP SAG
Sequences:
>Translated_323_residues MGILLTLASLWYGQNHHLLPESAAESAPLFDSLFNSTMTIATGIFLVVQGVLLYCIVRYRKRRGDKGDGDPNHGNVLLEI VWTAVPAVIILWLGLASIDVYQAVYGGTDVGGHIHTAMVMESSHEAEAGDPGYAYTPVVLPGKEMGQPDLVVQVQGMQYA WLFTYPESGLVASELHLPLNKRVRLDMTALDVNHAFWVPQFRLKQDVIPGRETHLEFVPTQLGQYPIICAELCGPYHGVM AGQLFVDTPEDFERWQQEQVLAARGEGSTLALVSDFSPVHPSPRPGSPEAESAFAHVHHQRLGVSPSDLKSLQSHSGSLP SAG >Mature_322_residues GILLTLASLWYGQNHHLLPESAAESAPLFDSLFNSTMTIATGIFLVVQGVLLYCIVRYRKRRGDKGDGDPNHGNVLLEIV WTAVPAVIILWLGLASIDVYQAVYGGTDVGGHIHTAMVMESSHEAEAGDPGYAYTPVVLPGKEMGQPDLVVQVQGMQYAW LFTYPESGLVASELHLPLNKRVRLDMTALDVNHAFWVPQFRLKQDVIPGRETHLEFVPTQLGQYPIICAELCGPYHGVMA GQLFVDTPEDFERWQQEQVLAARGEGSTLALVSDFSPVHPSPRPGSPEAESAFAHVHHQRLGVSPSDLKSLQSHSGSLPS AG
Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]
COG id: COG1622
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001505 - InterPro: IPR008972 - InterPro: IPR014222 - InterPro: IPR015964 - InterPro: IPR002429 - InterPro: IPR011759 [H]
Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]
EC number: =1.9.3.1 [H]
Molecular weight: Translated: 35253; Mature: 35121
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILLTLASLWYGQNHHLLPESAAESAPLFDSLFNSTMTIATGIFLVVQGVLLYCIVRYR CCHHHEEHHHHCCCCCCCCCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH KRRGDKGDGDPNHGNVLLEIVWTAVPAVIILWLGLASIDVYQAVYGGTDVGGHIHTAMVM HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE ESSHEAEAGDPGYAYTPVVLPGKEMGQPDLVVQVQGMQYAWLFTYPESGLVASELHLPLN ECCCCCCCCCCCCEECEEEECCHHCCCCCEEEEECCCEEEEEEECCCCCCCHHHCCCCCC KRVRLDMTALDVNHAFWVPQFRLKQDVIPGRETHLEFVPTQLGQYPIICAELCGPYHGVM CCEEEEEEEEECCCEEECCCHHHHHCCCCCCHHHHEEEHHHHCCCCCHHHHHCCCHHHHE AGQLFVDTPEDFERWQQEQVLAARGEGSTLALVSDFSPVHPSPRPGSPEAESAFAHVHHQ ECEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH RLGVSPSDLKSLQSHSGSLPSAG HCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GILLTLASLWYGQNHHLLPESAAESAPLFDSLFNSTMTIATGIFLVVQGVLLYCIVRYR CHHHEEHHHHCCCCCCCCCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH KRRGDKGDGDPNHGNVLLEIVWTAVPAVIILWLGLASIDVYQAVYGGTDVGGHIHTAMVM HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE ESSHEAEAGDPGYAYTPVVLPGKEMGQPDLVVQVQGMQYAWLFTYPESGLVASELHLPLN ECCCCCCCCCCCCEECEEEECCHHCCCCCEEEEECCCEEEEEEECCCCCCCHHHCCCCCC KRVRLDMTALDVNHAFWVPQFRLKQDVIPGRETHLEFVPTQLGQYPIICAELCGPYHGVM CCEEEEEEEEECCCEEECCCHHHHHCCCCCCHHHHEEEHHHHCCCCCHHHHHCCCHHHHE AGQLFVDTPEDFERWQQEQVLAARGEGSTLALVSDFSPVHPSPRPGSPEAESAFAHVHHQ ECEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH RLGVSPSDLKSLQSHSGSLPSAG HCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1659815; 8399373 [H]