Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609962

Identifier: 86609962

GI number: 86609962

Start: 2629261

End: 2630583

Strand: Direct

Name: 86609962

Synonym: CYB_2528

Alternate gene names: NA

Gene position: 2629261-2630583 (Clockwise)

Preceding gene: 86609961

Following gene: 86609963

Centisome position: 86.3

GC content: 60.02

Gene sequence:

>1323_bases
ATGGCTCTCCCCCCTATCGTTGTGTTGGACGATGATCCCACCGGATCCCAAACCGTTCACAGTTGCTTGCTCCTCACCCG
CTGGGATCCGCAGACTTTGAAGCTGGGGTTGCAGGATAGCTCGCCAATTCGCTTTATCCTCACCAATACTCGGGCTTTGC
CCCCGGCGAAGGCAGCGGAGGTGACGCGGTCGGTATGTGGGGCGTTGAAGGAGGTGATGGCGGAGCTGGGATGTGAGCAG
GCTATTTTCGTCAGCCGCTCCGACTCGACGCTGCGGGGGCATTACCCCCTGGAAACGGATGTGATGGCAGCAGAGCTGGG
GCCTTTTGATGCCCATTTTCTGGTGCCGGCCTTTTTTGAGGGAGGGCGCATCACCCGCAACAGTGTCCACTACCTACGGG
TGGGGGAGCGCTGGGTGCCGGTGCATGAGACGGAGTTTGCTCGGGATGCGGTGTTTGGCTACCACCACAGCTATTTGCCG
GACTATGTGCAGGAGAAAACCCAGGGGCGGATCCGGGCTGAGCAGGTGGAGCGATTGACCCTAGAGCAGATTCGCGCCGG
CTGTCTGGAGCGGCTTTTGAGTCTGGAGGGGAATGTCTGCTGTGTAGTGGATGGAGAAACTCAAGCGGATTTGGATCGCT
TTGCCCAGGATGTTTGGGCGGCTATAGAGCAGGGGAAGCGCTTTTTGTTCCGCAGCGCCGCCAGCCTCTTGACGGCTTTG
GCCCAATTGCCGCCACAGCCGGTTCTGCCAGAGCAGATGGGGCGGTTTGTCCGCTCAGATCGGCCAGGGGTGGTGATTGT
GGGATCCCATGTGCAAAAGTCCAGCCAGCAGTTGGCCCGCCTTCTGCAGGAGCCTGAAACCCAAGGCATCGAGGTGGAGG
TGAGGCGACTATTGGATCCCGACGCGGAGCTGCTGCCTGGGATCCTGGCCCAAGTTCACAGCGCCTATGAGCAGGGTCTG
ACGCCGGTGGTCTACACCAGCCGAGAGGAACTGACTTTTGAAAAGGACGCCGTAGAAATGCGCCTGGCTTTTGGACAGAA
GGTTTCGCGGTTGTTGATGGGCGTGGTGCAGGGGCTGCCAGAAGGGATCGGCTATCTCATCAGCAAGGGCGGCATCACCT
CCAACGACACCCTCAGCACTGGCCTCGACTTGCCGGCGGTGCGTCTGCTGGGGCAAGTCTACCCTGGGATCTCGATGGTG
ATCACCCCGTCCGATCATCCCCGCTTTCCCAACCTGCCGGTGGTGTTGTTTCCGGGCAATGTCGGCGAGGTGGATACGCT
GGTTTTGATTCATCGTCGCCTCAAAAGTCGGGGCTTGGTCTAG

Upstream 100 bases:

>100_bases
GAAGATGGCCAACTTGGGGGAAGATGAAAATAGCGGTTGCCCTTTGAGGGGGATTCGTCTGTCTGGAGTTCTCGGGTTGC
TTTGTCATTGAGACGGTCTC

Downstream 100 bases:

>100_bases
AGTGAAGTTCCTCCTGCCGATGGCTGAATTCGTCCCCCCGCCAGAAGCCCTGCCCACCTTGGATCGCTGGTGGGGATCCC
TGCGGCAGCCGCAGGCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQ
AIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLP
DYVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL
AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGL
TPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMV
ITPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV

Sequences:

>Translated_440_residues
MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQ
AIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLP
DYVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL
AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGL
TPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMV
ITPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV
>Mature_439_residues
ALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAEVTRSVCGALKEVMAELGCEQA
IFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFEGGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPD
YVQEKTQGRIRAEQVERLTLEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTALA
QLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDPDAELLPGILAQVHSAYEQGLT
PVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLPEGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVI
TPSDHPRFPNLPVVLFPGNVGEVDTLVLIHRRLKSRGLV

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48562; Mature: 48431

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAE
CCCCCEEEECCCCCCHHHHHHHHHEECCCCHHEEEECCCCCCEEEEEECCCCCCCHHHHH
VTRSVCGALKEVMAELGCEQAIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFE
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCHHHHHCCCCCCHHHHHHHHC
GGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPDYVQEKTQGRIRAEQVERLT
CCCEECCCEEEEEECCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
LEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDP
HHCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
DAELLPGILAQVHSAYEQGLTPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLP
CHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCH
EGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVITPSDHPRFPNLPVVLFPGN
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCC
VGEVDTLVLIHRRLKSRGLV
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALPPIVVLDDDPTGSQTVHSCLLLTRWDPQTLKLGLQDSSPIRFILTNTRALPPAKAAE
CCCCEEEECCCCCCHHHHHHHHHEECCCCHHEEEECCCCCCEEEEEECCCCCCCHHHHH
VTRSVCGALKEVMAELGCEQAIFVSRSDSTLRGHYPLETDVMAAELGPFDAHFLVPAFFE
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCHHHHHCCCCCCHHHHHHHHC
GGRITRNSVHYLRVGERWVPVHETEFARDAVFGYHHSYLPDYVQEKTQGRIRAEQVERLT
CCCEECCCEEEEEECCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
LEQIRAGCLERLLSLEGNVCCVVDGETQADLDRFAQDVWAAIEQGKRFLFRSAASLLTAL
HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQLPPQPVLPEQMGRFVRSDRPGVVIVGSHVQKSSQQLARLLQEPETQGIEVEVRRLLDP
HHCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
DAELLPGILAQVHSAYEQGLTPVVYTSREELTFEKDAVEMRLAFGQKVSRLLMGVVQGLP
CHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCH
EGIGYLISKGGITSNDTLSTGLDLPAVRLLGQVYPGISMVITPSDHPRFPNLPVVLFPGN
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCC
VGEVDTLVLIHRRLKSRGLV
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA