Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 86609749

GI number: 86609749

Start: 2419213

End: 2419452

Strand: Direct

Name: rpoZ

Synonym: CYB_2308

Alternate gene names: 86609749

Gene position: 2419213-2419452 (Clockwise)

Preceding gene: 86609748

Following gene: 86609757

Centisome position: 79.4

GC content: 55.42

Gene sequence:

>240_bases
ATGGCTTCCCGCAAGAATCAACTGGCTATTGACAATGACGAGCTGATGCGTCGGGTAGAGGCTCTGATCAACGCTTCCAA
AAATCGCTATCGCATCACGGTACAGGTGGCCAACCGCGCCAAGCGCCGCCGCTACGAGGATCCGGATGATATAGAAGATG
GCTGGATGAAGCCGATCCGCCGCGCCGTCATCGAAATGTCGGATGAACTGACTGAGCCGGAAATCATCGGCGATGAGTAG

Upstream 100 bases:

>100_bases
GGAAGGTTCTCTGCTAGGATCGCGGTAGCGGGACGGAGTCCTTTCGCGTTAGCGGGACGGAGTCTCGTTGGGATCCTGGT
GGCGATTTAAGACTGCGATT

Downstream 100 bases:

>100_bases
TCACTAGACTTGCGGCCTGCTGGCGCGACCGCCCTGTTGAAACTGCTAGCCGGCTGAGCGGCTAAGGGTAGAAGCTTTCG
GCAGCCGCCTATTTTGTCAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MASRKNQLAIDNDELMRRVEALINASKNRYRITVQVANRAKRRRYEDPDDIEDGWMKPIRRAVIEMSDELTEPEIIGDE

Sequences:

>Translated_79_residues
MASRKNQLAIDNDELMRRVEALINASKNRYRITVQVANRAKRRRYEDPDDIEDGWMKPIRRAVIEMSDELTEPEIIGDE
>Mature_78_residues
ASRKNQLAIDNDELMRRVEALINASKNRYRITVQVANRAKRRRYEDPDDIEDGWMKPIRRAVIEMSDELTEPEIIGDE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_SYNJB (Q2JJC6)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478511.1
- STRING:   Q2JJC6
- GeneID:   3902649
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2308
- TIGR:   CYB_2308
- eggNOG:   COG1758
- HOGENOM:   HBG284825
- OMA:   RYRITVQ
- ProtClustDB:   PRK00392
- BioCyc:   SSP321332:CYB_2308-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9317; Mature: 9185

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRKNQLAIDNDELMRRVEALINASKNRYRITVQVANRAKRRRYEDPDDIEDGWMKPIR
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCCCCCHHHHHHHH
RAVIEMSDELTEPEIIGDE
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ASRKNQLAIDNDELMRRVEALINASKNRYRITVQVANRAKRRRYEDPDDIEDGWMKPIR
CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCCCCCHHHHHHHH
RAVIEMSDELTEPEIIGDE
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA