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The map label for this gene is ydcM [C]

Identifier: 86609620

GI number: 86609620

Start: 2277227

End: 2278432

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_2174

Alternate gene names: 86609620

Gene position: 2278432-2277227 (Counterclockwise)

Preceding gene: 86609621

Following gene: 86609617

Centisome position: 74.78

GC content: 57.3

Gene sequence:

>1206_bases
ATGCTGCTTGGATTCCGCACCCGCTTAGAGCTGAATAACCGGCAGAAGACCCTAGCCGCTCAGCACGCTGGGGTAGCCCG
TCACGCCTACAACTGGGGCCTGGCCATCTGTCGGCAAGCCCTGGAGAACCGGCAGAAACTCCCCACCGCCATTGACCTGC
ACAAGCGCCTGGTAGCCGAGGTTAAGAAGGAAAACCCCTGGTACTACCAGGTCTCCAAATGCGCTCCTCAGCAGGCATTA
CGCAACTTGGAGCAAGCCTTTAAGCGCTGGCGGGGTGGGTTGGGGAAGTTCCCCCGCTTCAAACGCAAGGGAGTGCGAGA
CAGCTTTTACCTAGAAGGCAGCATCCGCATTTCTGGCGACCGCATCAAGGTGCCTATCTTCGGTTGGCTGCGCTGTGCAG
AGTTACTTCCGGCGACCACACCCAAGAACGTGGTCATCAGTCTTCGCGCCGGACACTGGTACATCTCCTTCAAATATGAA
GCTCCAGCGCCTCAAGTGGAGAAGACCGGGGAAGTTGTGGGAGTGGACTTAGGGATCCATCACTTGGCCACCTGCTCCGA
CGGGGAAGTATTCGAGAATCCAAAGCCCTACCGTAAGGCGAGGAGGCGTCTGACCAAACTGCAACGGCGGCTGAGTCGCA
AGCAGAAGGGATCCGCTAACCGTAAGAAGGCGGTGGTGCAGTTAGGCAGGGCCCACAAGCGGGTGGCAGACATTCGGCAA
GACAATCTGCACAAGCTAACGACTTACCTGGCCAAGAAGTATCGGGTGGTGGTGATTGAGGGCTTGCAGGTGAAGAACCT
GCTTAAGAACCGCAAGTTGGCAGGAGCGCTGTCAGACTGTGGGTTCTACGAGTTTCGGCGACAGCTAGAGTACAAGGCCC
AACTCTACGGCTGTCAGGTGGTGGTGGCGGATAGGTTTTATCCGTCCAGCCAACTGTGTTCAGGGTGTGGCCACAAACAG
AAGATGCCACTCAGCGAGCGGGTATTTCGCTGCCCGTGTTGTGGTCTGGAGCTAGACCGCGACTTGAATGCAGCCATCAA
CCTAGCCCAGTGGTATCTAACTACCTGCAGCTCGCGGGGAAGTAACGCCTGTGGAGATCCCTCTGGCGGGGCGGTGGAGG
TGAACTCTGCCGCCAGTCATGGGTCGCTGAAGCAGGAAGAAAGCAGCGATGCTGGGCAAAGTTCTGTTTTGTTCAGCGTT
GCATAA

Upstream 100 bases:

>100_bases
TGCCCTAAAAGCTGTTTCTGGTGCCCGCAGTACCATTATAGCATTCCTCCCGACACTGACCCTACGGGTACCGTACGGGG
CTCCTGCAATTTCTATCTGA

Downstream 100 bases:

>100_bases
GTCTTTCGGAGCGGCTATTCCATCAACAGGCCCAAGTCCAGGTGAGGCTGCCACAGATCGGCCAGGCGCTCCAGCAATTG
CTCCCGCTGCTGAGCATAGT

Product: ISSoc7, transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MLLGFRTRLELNNRQKTLAAQHAGVARHAYNWGLAICRQALENRQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRGGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPIFGWLRCAELLPATTPKNVVISLRAGHWYISFKYE
APAPQVEKTGEVVGVDLGIHHLATCSDGEVFENPKPYRKARRRLTKLQRRLSRKQKGSANRKKAVVQLGRAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEGLQVKNLLKNRKLAGALSDCGFYEFRRQLEYKAQLYGCQVVVADRFYPSSQLCSGCGHKQ
KMPLSERVFRCPCCGLELDRDLNAAINLAQWYLTTCSSRGSNACGDPSGGAVEVNSAASHGSLKQEESSDAGQSSVLFSV
A

Sequences:

>Translated_401_residues
MLLGFRTRLELNNRQKTLAAQHAGVARHAYNWGLAICRQALENRQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRGGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPIFGWLRCAELLPATTPKNVVISLRAGHWYISFKYE
APAPQVEKTGEVVGVDLGIHHLATCSDGEVFENPKPYRKARRRLTKLQRRLSRKQKGSANRKKAVVQLGRAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEGLQVKNLLKNRKLAGALSDCGFYEFRRQLEYKAQLYGCQVVVADRFYPSSQLCSGCGHKQ
KMPLSERVFRCPCCGLELDRDLNAAINLAQWYLTTCSSRGSNACGDPSGGAVEVNSAASHGSLKQEESSDAGQSSVLFSV
A
>Mature_401_residues
MLLGFRTRLELNNRQKTLAAQHAGVARHAYNWGLAICRQALENRQKLPTAIDLHKRLVAEVKKENPWYYQVSKCAPQQAL
RNLEQAFKRWRGGLGKFPRFKRKGVRDSFYLEGSIRISGDRIKVPIFGWLRCAELLPATTPKNVVISLRAGHWYISFKYE
APAPQVEKTGEVVGVDLGIHHLATCSDGEVFENPKPYRKARRRLTKLQRRLSRKQKGSANRKKAVVQLGRAHKRVADIRQ
DNLHKLTTYLAKKYRVVVIEGLQVKNLLKNRKLAGALSDCGFYEFRRQLEYKAQLYGCQVVVADRFYPSSQLCSGCGHKQ
KMPLSERVFRCPCCGLELDRDLNAAINLAQWYLTTCSSRGSNACGDPSGGAVEVNSAASHGSLKQEESSDAGQSSVLFSV
A

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=352, Percent_Identity=36.9318181818182, Blast_Score=182, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45187; Mature: 45187

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLGFRTRLELNNRQKTLAAQHAGVARHAYNWGLAICRQALENRQKLPTAIDLHKRLVAE
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VKKENPWYYQVSKCAPQQALRNLEQAFKRWRGGLGKFPRFKRKGVRDSFYLEGSIRISGD
HHHCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEEEECCC
RIKVPIFGWLRCAELLPATTPKNVVISLRAGHWYISFKYEAPAPQVEKTGEVVGVDLGIH
EEEECHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEECHH
HLATCSDGEVFENPKPYRKARRRLTKLQRRLSRKQKGSANRKKAVVQLGRAHKRVADIRQ
HHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DNLHKLTTYLAKKYRVVVIEGLQVKNLLKNRKLAGALSDCGFYEFRRQLEYKAQLYGCQV
HHHHHHHHHHHHCEEEEEEECCHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHCEEE
VVADRFYPSSQLCSGCGHKQKMPLSERVFRCPCCGLELDRDLNAAINLAQWYLTTCSSRG
EEECCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SNACGDPSGGAVEVNSAASHGSLKQEESSDAGQSSVLFSVA
CCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCCEEEEEC
>Mature Secondary Structure
MLLGFRTRLELNNRQKTLAAQHAGVARHAYNWGLAICRQALENRQKLPTAIDLHKRLVAE
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VKKENPWYYQVSKCAPQQALRNLEQAFKRWRGGLGKFPRFKRKGVRDSFYLEGSIRISGD
HHHCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEEEEECCC
RIKVPIFGWLRCAELLPATTPKNVVISLRAGHWYISFKYEAPAPQVEKTGEVVGVDLGIH
EEEECHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCEEEEEECHH
HLATCSDGEVFENPKPYRKARRRLTKLQRRLSRKQKGSANRKKAVVQLGRAHKRVADIRQ
HHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DNLHKLTTYLAKKYRVVVIEGLQVKNLLKNRKLAGALSDCGFYEFRRQLEYKAQLYGCQV
HHHHHHHHHHHHCEEEEEEECCHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHCEEE
VVADRFYPSSQLCSGCGHKQKMPLSERVFRCPCCGLELDRDLNAAINLAQWYLTTCSSRG
EEECCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
SNACGDPSGGAVEVNSAASHGSLKQEESSDAGQSSVLFSVA
CCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]