| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is pilB [H]
Identifier: 86609590
GI number: 86609590
Start: 2241125
End: 2243206
Strand: Reverse
Name: pilB [H]
Synonym: CYB_2143
Alternate gene names: 86609590
Gene position: 2243206-2241125 (Counterclockwise)
Preceding gene: 86609591
Following gene: 86609589
Centisome position: 73.63
GC content: 59.75
Gene sequence:
>2082_bases ATGAACGATCTTCCTCCCCCTCCTTTTACCTCGCGCCGCGCCGGCGCTGCCAGCAAAGCTCTGGCCATCGCCAACGTCAG CATTACCCCCTTTGGCCGCAAGTTAAAGGAGCTGGGCTTTGCCGACGATAAGCAGATCCAGGACATCCAAAACGCCCTCA AAGCGGATCGAGAGGGCAACAGCAAGGCCCTGGCTCTGGTGGTCAAGGATATCGTGGGCAAAGAGATCACCCCTGACCTG GAGCGGGCTTACAAACGGCAGCAGCTCTTTGAACTGAAAATCATCTACGGGATCCCCTCCCTGGATGTCGACCTGGAGCC GGTGGAGATCTCCGAGATGATTGGGCTGATCGACTCGATCTTGCCCCTCGACATCTGCAACCGCTACAAATTCTTGCCCA TTCGCCGTCGAGACAATCAGGTGACGGTGGCGATGGTCAAGCCAGACAACCTGCAGGCACTGGACGACATTCAACGGCGC TTCCGCATCCAGGGGCTGAAGCTGCAGCGGCGGGTCTTCACCCAGCGGGATTTCGAGACCCTGATCAGCCGCTACATGGA TGCGCAGGCGGAGCTGCTGGCCATCAAGGGGATCAACGACGCGGCTGCTGCCCAACAGGCGGCTGCTGCCCAACAGGAAG AAGAGGTGGTGGTCAACACTGCCGAAATCGATCTGGATGCTATTGAGGATGTGGCTGCCGATGAGGCCGGCGAGGGATCC CTGGAGCAGCAGGTCAAATCGGCAGATGATGCCCCGATTATTAAACTGTCCAACCAGATCCTGGTCAAGGCCCTGCAGGA TGGGGCGTCCGACATCCACATCGAGCCACAAGAAGAATACCTGCGCATCCGCTTCCGCAAAGATGGGGTGTTGCGGCAGG CTTTTGAAAACTTTCCCAAGAAGATCGTCCCCGCCCTCACTGCCCGCTTTAAAATCATCTCCAACCTGAATATTGCCGAG CGGCGCATGCCCCAGGATGGGCGGATTCGGCGGGTCTTCAAGGGGCGCAAGGTGGACTTTCGGGTCAGCACCCTGCCCTC CCGCTATGGGGAAAAGATCGTGCTGCGGGTTCTGGACAACTCCGCCACCCAACTGGGGCTGGACAAGCTGATCACCGACC CAGAGACCTTGGAAAGCTTCAAGGAGATTGTCAGGCGACCCTTTGGCCTAATCTTGGTGACCGGGCCAACGGGATCCGGG AAAACCACCACCCTCTACTCGGCTCTGGCGGAGGTGAACGATCCGGGCATCAACATCAGCACTGCCGAGGATCCCATTGA ATACTCGCTGCCGGGGATCACCCAAGTGCAGGTGATCCGAGAAAAGGGCATGGACTTTGCCATGATCCTGCGGGCCTTCT TGCGGCAAGACCCGGATGTGATCCTGGTGGGGGAAACCCGCGACCACGAGACGGCCAAAACCGCCATCGAAGCCTCCCTC ACGGGCCACTTGGTGTTGACCACGCTGCACACCAACGATGCCCCTGGCGCCATTGCCCGTCTGACGGAGATGGGGATCGA GCCATTTATGATCTCCAGCTCGTTGCTGGGGGTGTTGGCCCAGCGCTTGATGCGCCGGGTGTGTACCGAATGTCGGATCC CCTACCACCCCACGCCGGAGGAGCTGGCCCGCTATGGCCTTACCCTCAGTGGCGACGGCGAGCAGCTCACCTTCTACAAA GCCAACAAGCTCTCCCCCAAAGAAGTGGAGCAGCGCAAGGCCACCGGCAAGCCCATCTGCGAGAAGTGTGGGGGCGTGGG CTACAAAGGTCGGGTAGGGGTGTACGAGTTCATGCGCATGAACGACCGCCTTGCGGACTTGATCAACAAAGAGGCCCCCA CGGAGGTGATCAAAGAAGCGGCGGTGGAAAGTGGCATGAAAACCCTGCTGGCCTACAGTTTGATGCTGGTGAAGCAGGGC CTCACCACGCTGGAGGAGGTGGATCGGGTGACCCTCACCGACAAGGGTCTGGAAAGCGAGCTGAAGGCCCGTGCCAAGGC TCTCAGCACCTGCCGCAACTGTGGCGCGGCCTTGCATGTGGACTGGATGGACTGCCCCTATTGCCTGACCCCGAAGTTTT AG
Upstream 100 bases:
>100_bases GGGTTGGCGGCCTCTGGGCAGTCCAGACTTATGTATCTTTACCGTTGACCCTTAGCAGCCGAGTGCAGTGAAATAGAGGC ATTGTGGGTGACCCGCTAGC
Downstream 100 bases:
>100_bases GAAGTCGGCTTGGCACTTGACGATGTTGGGGTGCCGACTATAACAGTCCTATACAGTTGCCTTTCTCACATGGCTTTGGC CGGCGGCTCTTTTGATAGAC
Product: type IV pilus assembly protein PilB
Products: NA
Alternate protein names: Cholera toxin secretion protein epsE; Type II traffic warden ATPase [H]
Number of amino acids: Translated: 693; Mature: 693
Protein sequence:
>693_residues MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGNSKALALVVKDIVGKEITPDL ERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSILPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRR FRIQGLKLQRRVFTQRDFETLISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPKKIVPALTARFKIISNLNIAE RRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDNSATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSG KTTTLYSALAEVNDPGINISTAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPEELARYGLTLSGDGEQLTFYK ANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRMNDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQG LTTLEEVDRVTLTDKGLESELKARAKALSTCRNCGAALHVDWMDCPYCLTPKF
Sequences:
>Translated_693_residues MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGNSKALALVVKDIVGKEITPDL ERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSILPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRR FRIQGLKLQRRVFTQRDFETLISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPKKIVPALTARFKIISNLNIAE RRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDNSATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSG KTTTLYSALAEVNDPGINISTAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPEELARYGLTLSGDGEQLTFYK ANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRMNDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQG LTTLEEVDRVTLTDKGLESELKARAKALSTCRNCGAALHVDWMDCPYCLTPKF >Mature_693_residues MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGNSKALALVVKDIVGKEITPDL ERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSILPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRR FRIQGLKLQRRVFTQRDFETLISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPKKIVPALTARFKIISNLNIAE RRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDNSATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSG KTTTLYSALAEVNDPGINISTAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPEELARYGLTLSGDGEQLTFYK ANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRMNDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQG LTTLEEVDRVTLTDKGLESELKARAKALSTCRNCGAALHVDWMDCPYCLTPKF
Specific function: Required for secretion of cholera toxin through the outer membrane [H]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=413, Percent_Identity=45.7627118644068, Blast_Score=340, Evalue=2e-94, Organism=Escherichia coli, GI1786296, Length=399, Percent_Identity=42.6065162907268, Blast_Score=305, Evalue=9e-84, Organism=Escherichia coli, GI87082188, Length=198, Percent_Identity=40.9090909090909, Blast_Score=113, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013369 - InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 77060; Mature: 77060
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGN CCCCCCCCCCCCCCCCCHHEEEEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC SKALALVVKDIVGKEITPDLERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSI CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHH LPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRRFRIQGLKLQRRVFTQRDFET HHHHHHCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHHHCCCCCCCH LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPK HHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCEECCCHHHHEEEEECCCHHHHHHHHHHHH KIVPALTARFKIISNLNIAERRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDN HHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHCCCCEEEEEECCCHHHCCEEEEHHHCC SATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSGKTTTLYSALAEVNDPGINIS CHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEE TAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPE CCEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH ELARYGLTLSGDGEQLTFYKANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRM HHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHH NDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQGLTTLEEVDRVTLTDKGLESE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHH LKARAKALSTCRNCGAALHVDWMDCPYCLTPKF HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure MNDLPPPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQNALKADREGN CCCCCCCCCCCCCCCCCHHEEEEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC SKALALVVKDIVGKEITPDLERAYKRQQLFELKIIYGIPSLDVDLEPVEISEMIGLIDSI CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHH LPLDICNRYKFLPIRRRDNQVTVAMVKPDNLQALDDIQRRFRIQGLKLQRRVFTQRDFET HHHHHHCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LISRYMDAQAELLAIKGINDAAAAQQAAAAQQEEEVVVNTAEIDLDAIEDVAADEAGEGS HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHHHCCCCCCCH LEQQVKSADDAPIIKLSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPK HHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCEECCCHHHHEEEEECCCHHHHHHHHHHHH KIVPALTARFKIISNLNIAERRMPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVLRVLDN HHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHCCCCEEEEEECCCHHHCCEEEEHHHCC SATQLGLDKLITDPETLESFKEIVRRPFGLILVTGPTGSGKTTTLYSALAEVNDPGINIS CHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEE TAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLRQDPDVILVGETRDHETAKTAIEASL CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC TGHLVLTTLHTNDAPGAIARLTEMGIEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTPE CCEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH ELARYGLTLSGDGEQLTFYKANKLSPKEVEQRKATGKPICEKCGGVGYKGRVGVYEFMRM HHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHH NDRLADLINKEAPTEVIKEAAVESGMKTLLAYSLMLVKQGLTTLEEVDRVTLTDKGLESE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHH LKARAKALSTCRNCGAALHVDWMDCPYCLTPKF HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8423007; 10952301 [H]