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The map label for this gene is ydcM [C]

Identifier: 86609573

GI number: 86609573

Start: 2219259

End: 2220470

Strand: Direct

Name: ydcM [C]

Synonym: CYB_2126

Alternate gene names: 86609573

Gene position: 2219259-2220470 (Clockwise)

Preceding gene: 86609572

Following gene: 86609574

Centisome position: 72.84

GC content: 55.94

Gene sequence:

>1212_bases
ATGACCCAAGTCCTGACCGTCCCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTGGCCCAGCAGGTCTGCAGACGGGTGGCAGGCGCTCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTAGGTTCGTTACCTACGATGCACGTATCTTCTCGTTTCG
CGAGAAAGACTGGACAGTGTCGCTTGCCACGGTTGATGGAAGAGAACGCTTTGAGCTAGCCATTGGCAACTACCAGAGGG
GAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGCAAAGACGGCTCCTACTCCATCCAGATTTGTGTC
GAGGCAGAGCCCCCCAAGCAACAGAACACCGACAAGGTGATTGGTGTTGACCTGGGACGGCGAGACATTGCACATACCTC
CGAAGGAGACAACTGGAATGGACAGCAGCTGAACAAAGTCCGAGATCACTACTGTCGGTTAAGAGCGTCTCTTCAGCGCA
AGGCCAGTAAGGGCACCCGCAGTTGCAGGCGGCGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAAGAGAGACGCTTT
CAAGCTTGGGTGAAGCACAGTATCGCTAAGCGCATCGTTAAAACAGCAAAATCTCTTTCTGCCTGCATTGCAATTGAGGA
CTTGAGCGGCATCCGGGGGCGTACCAACCGGCAGCCCCGCAGTCGTGAGGAGCGGCGGCGTAGCAATAGCTGGGCGTTCT
ACCAGCTGCGGCGGTTTATCGAATACAAGGCTGTGAGGGCGGGTGTCAAAGTGGTAGCTGTCCCTGCGGCCTATACCTCG
CAGATCTGCCACAAGTGCCTGCGTATTCATCCCGACTCCGCTCAATCCTATCGCAAGGGTAAGCAGTTCAAATGCGGGCA
CTGCGGTTGGGAAGGGGATGCAGATTTTAACGGTGCGAAGGTGATTGCGCTTTTGGGGGCTGCCGTAAACCAGCCTAGAG
GTTCGGGCCTGTTTTGTTCTCTGGTGGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTCCGTACCGCTTTAGCGGTC
GGAGTCGGGTAG

Upstream 100 bases:

>100_bases
CGATGCAACTTAAAGCTGTTCGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGATAGAACC

Downstream 100 bases:

>100_bases
TTTACAGCAGAAAGTGGTAAGCCTACGGCACCGCACCGCTGCTGATAACGAGCTATACTCAGCTGCTGCTGGAGAGGCTG
CTGGGGCCGGCCATAATGGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
QAWVKHSIAKRIVKTAKSLSACIAIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLRIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAV
GVG

Sequences:

>Translated_403_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICV
EAEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
QAWVKHSIAKRIVKTAKSLSACIAIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTS
QICHKCLRIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAV
GVG
>Mature_402_residues
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVE
AEPPKQQNTDKVIGVDLGRRDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRFQ
AWVKHSIAKRIVKTAKSLSACIAIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFIEYKAVRAGVKVVAVPAAYTSQ
ICHKCLRIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAKVIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAVG
VG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=230, Percent_Identity=29.1304347826087, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45532; Mature: 45401

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QAWVKHSIAKRIVKTAKSLSACIAIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLRIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRRFVTYDARIFSFREKDWTVSLATVDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYSIQICVEAEPPKQQNTDKVIGVDLGR
CHHEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
RDIAHTSEGDNWNGQQLNKVRDHYCRLRASLQRKASKGTRSCRRRCRQLLQRLSGKERRF
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QAWVKHSIAKRIVKTAKSLSACIAIEDLSGIRGRTNRQPRSREERRRSNSWAFYQLRRFI
HHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH
EYKAVRAGVKVVAVPAAYTSQICHKCLRIHPDSAQSYRKGKQFKCGHCGWEGDADFNGAK
HHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHH
VIALLGAAVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]