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The map label for this gene is rlmM [H]

Identifier: 86609471

GI number: 86609471

Start: 2126004

End: 2126951

Strand: Direct

Name: rlmM [H]

Synonym: CYB_2023

Alternate gene names: 86609471

Gene position: 2126004-2126951 (Clockwise)

Preceding gene: 86609470

Following gene: 86609473

Centisome position: 69.78

GC content: 61.5

Gene sequence:

>948_bases
GTGCAGCGGCTAAAGGAAGCACCTGGCTTGGTGTGGGTATGCAGCCAACGCTCATTTGCCGACCTGGCTGGGGCTTGGCA
AGCTGACCCGCCCATTTTTTTGCGCCACATCTGCCCCATTCACCAAGAACGGCGGCTGGCCGAGGGATCCTTAGTTGAAT
TGCGCCTTGATGGGGAAATGTTGGCAGCCATTGACCCCGCCCTCAGCTTTTCGGTTCAGACGCGCCTGTTTGGAGAGCCG
GCTCTCAAGCCCTTCCAGGTCAATGAAACCCTGGCCGAACAGGTGATGGCAGCGGTGGGATCCCCCCTGCAGGTCAAAGA
CCCCCAGCAGGTAATCTCGGTGGTGATCCTGGCTCAACCGATGGGCATTCGCGCTTGGCTGGGCCTATCCTTGGCTGCCC
AGAACCTCTCCAACTGGGCCGGTGGGATCCATCGCTTTCGGCAGGATCCAGAGCAGATCAGCCGCTCCGAGTTTAAGCTG
CTGGAGGCCATCCAGGTGTTTCAGATTCCCTTGGTGCCAGGGGGACAGGCTCTGGATCTGGGGGCAGCGCCGGGGGGATG
GTCGCGCATTTTGCGTCTATATGGCCAGCAGGTCACGGCAGTGGATCCGGCGGACTTGGACGAGCGCCTCAGCCAAGATC
CGGGGATCTGCCACCATCGCCTCAGCGCCCAAGCCTACTTGGCCCGTGGCCCAGGCCGGTTTCACCTGATCCTCAACGAC
ATGCGGATGGATGGCCCGGCTTCTGCCCGCCTGATGGTGGCTTTTGCCCCCCATCTGCAGCCACAGGGGAGAGCTGTGAT
GACCCTGAAGTTACCTCGCCAACACCGCCTGCGGGTGCTGCGGCAAAGTTTGGAGATCTTGGGTAGTGCCTTCCCCTTGG
TGAGGGCCCGCCACCTGTTTCACAACCGCAGCGAAGTCACCCTCTACTTGGGGATCCCTGCCCCTTAA

Upstream 100 bases:

>100_bases
TCCTCTCCCCCCTGATACCCATACATGGCTGGGCAGTGCCGACCCGGATTTTATGGATTTGGCGATCCGGGAGATAGAAG
CTGCGGATCCAGAGGCTGCC

Downstream 100 bases:

>100_bases
TCTGCCGTTTCCACCACCTGAATCTCCCGACGGAGCACCATTTCGCGAATGGACTCCAGCAAGCCTATCTCTTCGGGGGA
GATTTTGCCGTCCGACCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA 2'-O-ribose methyltransferase rlmM [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQRLKEAPGLVWVCSQRSFADLAGAWQADPPIFLRHICPIHQERRLAEGSLVELRLDGEMLAAIDPALSFSVQTRLFGEP
ALKPFQVNETLAEQVMAAVGSPLQVKDPQQVISVVILAQPMGIRAWLGLSLAAQNLSNWAGGIHRFRQDPEQISRSEFKL
LEAIQVFQIPLVPGGQALDLGAAPGGWSRILRLYGQQVTAVDPADLDERLSQDPGICHHRLSAQAYLARGPGRFHLILND
MRMDGPASARLMVAFAPHLQPQGRAVMTLKLPRQHRLRVLRQSLEILGSAFPLVRARHLFHNRSEVTLYLGIPAP

Sequences:

>Translated_315_residues
MQRLKEAPGLVWVCSQRSFADLAGAWQADPPIFLRHICPIHQERRLAEGSLVELRLDGEMLAAIDPALSFSVQTRLFGEP
ALKPFQVNETLAEQVMAAVGSPLQVKDPQQVISVVILAQPMGIRAWLGLSLAAQNLSNWAGGIHRFRQDPEQISRSEFKL
LEAIQVFQIPLVPGGQALDLGAAPGGWSRILRLYGQQVTAVDPADLDERLSQDPGICHHRLSAQAYLARGPGRFHLILND
MRMDGPASARLMVAFAPHLQPQGRAVMTLKLPRQHRLRVLRQSLEILGSAFPLVRARHLFHNRSEVTLYLGIPAP
>Mature_315_residues
MQRLKEAPGLVWVCSQRSFADLAGAWQADPPIFLRHICPIHQERRLAEGSLVELRLDGEMLAAIDPALSFSVQTRLFGEP
ALKPFQVNETLAEQVMAAVGSPLQVKDPQQVISVVILAQPMGIRAWLGLSLAAQNLSNWAGGIHRFRQDPEQISRSEFKL
LEAIQVFQIPLVPGGQALDLGAAPGGWSRILRLYGQQVTAVDPADLDERLSQDPGICHHRLSAQAYLARGPGRFHLILND
MRMDGPASARLMVAFAPHLQPQGRAVMTLKLPRQHRLRVLRQSLEILGSAFPLVRARHLFHNRSEVTLYLGIPAP

Specific function: Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA [H]

COG id: COG2933

COG function: function code R; Predicted SAM-dependent methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RlmE family. RlmM subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011224
- InterPro:   IPR002877 [H]

Pfam domain/function: PF01728 FtsJ [H]

EC number: NA

Molecular weight: Translated: 34847; Mature: 34847

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLKEAPGLVWVCSQRSFADLAGAWQADPPIFLRHICPIHQERRLAEGSLVELRLDGEM
CCCHHHCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHCCHHHHHHCCCCCEEEEEECCCE
LAAIDPALSFSVQTRLFGEPALKPFQVNETLAEQVMAAVGSPLQVKDPQQVISVVILAQP
EEHHCHHHHHHHHHEECCCCCCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
MGIRAWLGLSLAAQNLSNWAGGIHRFRQDPEQISRSEFKLLEAIQVFQIPLVPGGQALDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEEC
GAAPGGWSRILRLYGQQVTAVDPADLDERLSQDPGICHHRLSAQAYLARGPGRFHLILND
CCCCCHHHHHHHHHCCCEEECCCCCHHHHHCCCCCHHHHHHHHHHHEECCCCEEEEEEEC
MRMDGPASARLMVAFAPHLQPQGRAVMTLKLPRQHRLRVLRQSLEILGSAFPLVRARHLF
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNRSEVTLYLGIPAP
CCCCCEEEEEECCCC
>Mature Secondary Structure
MQRLKEAPGLVWVCSQRSFADLAGAWQADPPIFLRHICPIHQERRLAEGSLVELRLDGEM
CCCHHHCCCEEEEECCCCHHHHCCCCCCCCCHHHHHHCCHHHHHHCCCCCEEEEEECCCE
LAAIDPALSFSVQTRLFGEPALKPFQVNETLAEQVMAAVGSPLQVKDPQQVISVVILAQP
EEHHCHHHHHHHHHEECCCCCCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
MGIRAWLGLSLAAQNLSNWAGGIHRFRQDPEQISRSEFKLLEAIQVFQIPLVPGGQALDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCEEEC
GAAPGGWSRILRLYGQQVTAVDPADLDERLSQDPGICHHRLSAQAYLARGPGRFHLILND
CCCCCHHHHHHHHHCCCEEECCCCCHHHHHCCCCCHHHHHHHHHHHEECCCCEEEEEEEC
MRMDGPASARLMVAFAPHLQPQGRAVMTLKLPRQHRLRVLRQSLEILGSAFPLVRARHLF
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HNRSEVTLYLGIPAP
CCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA