Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609473

Identifier: 86609473

GI number: 86609473

Start: 2127282

End: 2127521

Strand: Direct

Name: 86609473

Synonym: CYB_2024

Alternate gene names: NA

Gene position: 2127282-2127521 (Clockwise)

Preceding gene: 86609471

Following gene: 86609474

Centisome position: 69.82

GC content: 60.42

Gene sequence:

>240_bases
ATGGCTGGCCCGGATCCCAGGAGCACTGCGCACGATTGCGCCACCCTCTGTCGAGATGGCTGTGTCTTGGGAGAGGACTG
CCCCCACCGAGAGGCGGCTCGCCAAGCCGTGGCCTTTGTCATGAGCACCGACTGGGAGACCTTGATGCGGATCGCCGAAT
CCAAGAACCTACCCAAAAGCTCCCCTCAGGAAGAGATGGATCCCCTGCAGTTTTTGGAGAATTACCGCTTGGGCGGGTAA

Upstream 100 bases:

>100_bases
CCTCATCCAAGCTACCCGCCCTGACCCAAATCTCCTGCAAGCGCAAGATTCTCTTCAGGTATCCTAAAGAAAACGTGAAA
CCCACCGAGAGGAAGACATC

Downstream 100 bases:

>100_bases
GCCCCAACCAGTCTCCCTAAGGACAAGGGATCCCTGCTGAGGATCCAGGGGTTTTGAGCCATACTGAGTTAGGTGGGATC
CCTGGATTCTATGGTTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MAGPDPRSTAHDCATLCRDGCVLGEDCPHREAARQAVAFVMSTDWETLMRIAESKNLPKSSPQEEMDPLQFLENYRLGG

Sequences:

>Translated_79_residues
MAGPDPRSTAHDCATLCRDGCVLGEDCPHREAARQAVAFVMSTDWETLMRIAESKNLPKSSPQEEMDPLQFLENYRLGG
>Mature_78_residues
AGPDPRSTAHDCATLCRDGCVLGEDCPHREAARQAVAFVMSTDWETLMRIAESKNLPKSSPQEEMDPLQFLENYRLGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8753; Mature: 8622

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPDPRSTAHDCATLCRDGCVLGEDCPHREAARQAVAFVMSTDWETLMRIAESKNLPKS
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
SPQEEMDPLQFLENYRLGG
CCHHHCCHHHHHHHHCCCC
>Mature Secondary Structure 
AGPDPRSTAHDCATLCRDGCVLGEDCPHREAARQAVAFVMSTDWETLMRIAESKNLPKS
CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
SPQEEMDPLQFLENYRLGG
CCHHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA